Results 1 - 20 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24622 | 5' | -57.9 | NC_005264.1 | + | 74705 | 1.08 | 0.002382 |
Target: 5'- uCAACGACUUGUAGGGCGCGGCGCGCGa -3' miRNA: 3'- -GUUGCUGAACAUCCCGCGCCGCGCGC- -5' |
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24622 | 5' | -57.9 | NC_005264.1 | + | 153280 | 0.68 | 0.746485 |
Target: 5'- --cCGGCUucUGUAGcgaGGCGCgGGCGaCGCGu -3' miRNA: 3'- guuGCUGA--ACAUC---CCGCG-CCGC-GCGC- -5' |
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24622 | 5' | -57.9 | NC_005264.1 | + | 128883 | 0.68 | 0.755925 |
Target: 5'- aAGCGGCcccuaucGGGCGCGGUcccgGCGCGc -3' miRNA: 3'- gUUGCUGaacau--CCCGCGCCG----CGCGC- -5' |
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24622 | 5' | -57.9 | NC_005264.1 | + | 146403 | 0.66 | 0.86163 |
Target: 5'- aCGAUGACcucGUAGGGCG-GGUGCugauggcucgaugccGCGg -3' miRNA: 3'- -GUUGCUGaa-CAUCCCGCgCCGCG---------------CGC- -5' |
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24622 | 5' | -57.9 | NC_005264.1 | + | 124320 | 0.72 | 0.509893 |
Target: 5'- gCGGCGGCUgacccGUGGGGCG-GGCGacugGCGg -3' miRNA: 3'- -GUUGCUGAa----CAUCCCGCgCCGCg---CGC- -5' |
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24622 | 5' | -57.9 | NC_005264.1 | + | 25347 | 0.71 | 0.55839 |
Target: 5'- gGACGAgUUG-GGGGUaGCGGUGCGUa -3' miRNA: 3'- gUUGCUgAACaUCCCG-CGCCGCGCGc -5' |
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24622 | 5' | -57.9 | NC_005264.1 | + | 35969 | 0.7 | 0.638185 |
Target: 5'- uGGCGAUUcgccUGgagGGGGCGCGGagagcgaaaCGCGCa -3' miRNA: 3'- gUUGCUGA----ACa--UCCCGCGCC---------GCGCGc -5' |
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24622 | 5' | -57.9 | NC_005264.1 | + | 154791 | 0.7 | 0.638185 |
Target: 5'- -cGCGACguggGUgaagaggcggAGGGCGCGGUgGCGCc -3' miRNA: 3'- guUGCUGaa--CA----------UCCCGCGCCG-CGCGc -5' |
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24622 | 5' | -57.9 | NC_005264.1 | + | 121852 | 0.69 | 0.698016 |
Target: 5'- aAACGGgUUGgcggAGGGC-CGGuCGCGCu -3' miRNA: 3'- gUUGCUgAACa---UCCCGcGCC-GCGCGc -5' |
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24622 | 5' | -57.9 | NC_005264.1 | + | 157194 | 0.68 | 0.746485 |
Target: 5'- -uGCGACUaccgccgcgcUGUGGGGacaccuaGCGuCGCGCGg -3' miRNA: 3'- guUGCUGA----------ACAUCCCg------CGCcGCGCGC- -5' |
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24622 | 5' | -57.9 | NC_005264.1 | + | 18512 | 0.68 | 0.724423 |
Target: 5'- aAACGcCUUGccgaucgGGGGCGCcgucucccccugagGGCGCGCc -3' miRNA: 3'- gUUGCuGAACa------UCCCGCG--------------CCGCGCGc -5' |
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24622 | 5' | -57.9 | NC_005264.1 | + | 129562 | 0.69 | 0.68416 |
Target: 5'- -uGCGGCgccgcccucaGGGGCGCGGauCGCGCGu -3' miRNA: 3'- guUGCUGaaca------UCCCGCGCC--GCGCGC- -5' |
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24622 | 5' | -57.9 | NC_005264.1 | + | 121896 | 0.77 | 0.301378 |
Target: 5'- -uGCGGCUgcgaucgaccGGGGCGCGGCGCgGCGg -3' miRNA: 3'- guUGCUGAaca-------UCCCGCGCCGCG-CGC- -5' |
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24622 | 5' | -57.9 | NC_005264.1 | + | 36796 | 0.68 | 0.736949 |
Target: 5'- aCAACGACUuaguUGUcucuGcGGCGCaGGCgagGCGCGg -3' miRNA: 3'- -GUUGCUGA----ACAu---C-CCGCG-CCG---CGCGC- -5' |
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24622 | 5' | -57.9 | NC_005264.1 | + | 52201 | 0.76 | 0.309665 |
Target: 5'- uGAgGGCc-GUGGGGCGCGGUGgCGCGa -3' miRNA: 3'- gUUgCUGaaCAUCCCGCGCCGC-GCGC- -5' |
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24622 | 5' | -57.9 | NC_005264.1 | + | 22764 | 0.7 | 0.648214 |
Target: 5'- aUAGCGGCgggcaaUGaGGGGCGCGGCGacacuGCu -3' miRNA: 3'- -GUUGCUGa-----ACaUCCCGCGCCGCg----CGc -5' |
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24622 | 5' | -57.9 | NC_005264.1 | + | 20425 | 0.68 | 0.743634 |
Target: 5'- gAugGACUcgucgaagcagcaaUGUGGGcGUagccggcggacaGCGGCGCGCa -3' miRNA: 3'- gUugCUGA--------------ACAUCC-CG------------CGCCGCGCGc -5' |
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24622 | 5' | -57.9 | NC_005264.1 | + | 45739 | 0.68 | 0.755925 |
Target: 5'- uCGACGGCUccgaaaacUGccaUAGGaccccugcGCGgGGCGCGCGg -3' miRNA: 3'- -GUUGCUGA--------AC---AUCC--------CGCgCCGCGCGC- -5' |
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24622 | 5' | -57.9 | NC_005264.1 | + | 9923 | 0.72 | 0.500398 |
Target: 5'- -cGCGACUgc--GGGCuuuGCGGCGCGCu -3' miRNA: 3'- guUGCUGAacauCCCG---CGCCGCGCGc -5' |
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24622 | 5' | -57.9 | NC_005264.1 | + | 106599 | 0.71 | 0.598097 |
Target: 5'- gCAugGGCUU-UGGGGuCGCGGCGUacGUGa -3' miRNA: 3'- -GUugCUGAAcAUCCC-GCGCCGCG--CGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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