miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24624 3' -64.9 NC_005264.1 + 6459 0.66 0.525131
Target:  5'- aACUCCUCGGcGG-CGCGGcgaacgucggggugcGCGGCcaUCg -3'
miRNA:   3'- cUGAGGAGCCuCCgGCGCC---------------CGCCG--AG- -5'
24624 3' -64.9 NC_005264.1 + 125486 0.66 0.525131
Target:  5'- aACUCCUCGGcGG-CGCGGcgaacgucggggugcGCGGCcaUCg -3'
miRNA:   3'- cUGAGGAGCCuCCgGCGCC---------------CGCCG--AG- -5'
24624 3' -64.9 NC_005264.1 + 79207 0.66 0.521426
Target:  5'- cGAC-CCUgGGgcuAGGCUGCGugcaGGCGGCg- -3'
miRNA:   3'- -CUGaGGAgCC---UCCGGCGC----CCGCCGag -5'
24624 3' -64.9 NC_005264.1 + 96636 0.66 0.518653
Target:  5'- cGCUggCCgCGGAGGCgcaccgcccgccgaUGCGGGCGGUg- -3'
miRNA:   3'- cUGA--GGaGCCUCCG--------------GCGCCCGCCGag -5'
24624 3' -64.9 NC_005264.1 + 51764 0.66 0.512207
Target:  5'- uACUCUgaaGGGGaGCuCGCGcGGCGGCa- -3'
miRNA:   3'- cUGAGGag-CCUC-CG-GCGC-CCGCCGag -5'
24624 3' -64.9 NC_005264.1 + 133719 0.67 0.476051
Target:  5'- cGCUCCUCaGGuacGCCuCGGGgGGUUCg -3'
miRNA:   3'- cUGAGGAG-CCuc-CGGcGCCCgCCGAG- -5'
24624 3' -64.9 NC_005264.1 + 95327 0.67 0.453241
Target:  5'- gGACgugUCUCGcGugauccgaggcaaugGGGCCGaCGGGCGGCg- -3'
miRNA:   3'- -CUGa--GGAGC-C---------------UCCGGC-GCCCGCCGag -5'
24624 3' -64.9 NC_005264.1 + 58250 0.67 0.449785
Target:  5'- uGCUCaCUCGGcccgaucCCGUGGGCGGCa- -3'
miRNA:   3'- cUGAG-GAGCCucc----GGCGCCCGCCGag -5'
24624 3' -64.9 NC_005264.1 + 128412 0.67 0.441208
Target:  5'- -cCUCCUCGaaAGuGCuCGCGGGUcucGGCUCa -3'
miRNA:   3'- cuGAGGAGCc-UC-CG-GCGCCCG---CCGAG- -5'
24624 3' -64.9 NC_005264.1 + 32530 0.67 0.441208
Target:  5'- cGACccaUCCUCGGcccuGGCUGUGGauGUGGCUg -3'
miRNA:   3'- -CUG---AGGAGCCu---CCGGCGCC--CGCCGAg -5'
24624 3' -64.9 NC_005264.1 + 141436 0.67 0.436107
Target:  5'- ---aCCUCGGAGGCCacccucuccaucgagGCGaGCGGCg- -3'
miRNA:   3'- cugaGGAGCCUCCGG---------------CGCcCGCCGag -5'
24624 3' -64.9 NC_005264.1 + 149924 0.68 0.407858
Target:  5'- gGACgCgUCGGGGGaggaCUGCgaggccGGGCGGCUCg -3'
miRNA:   3'- -CUGaGgAGCCUCC----GGCG------CCCGCCGAG- -5'
24624 3' -64.9 NC_005264.1 + 97602 0.68 0.407858
Target:  5'- -cUUCCUCGGccGCgGCGGcuaCGGCUCa -3'
miRNA:   3'- cuGAGGAGCCucCGgCGCCc--GCCGAG- -5'
24624 3' -64.9 NC_005264.1 + 30898 0.68 0.407858
Target:  5'- gGACgCgUCGGGGGaggaCUGCgaggccGGGCGGCUCg -3'
miRNA:   3'- -CUGaGgAGCCUCC----GGCG------CCCGCCGAG- -5'
24624 3' -64.9 NC_005264.1 + 17677 0.69 0.376131
Target:  5'- ---gCCUCaGGcgcagccgAGGCCGC-GGCGGCUCg -3'
miRNA:   3'- cugaGGAG-CC--------UCCGGCGcCCGCCGAG- -5'
24624 3' -64.9 NC_005264.1 + 41071 0.69 0.346841
Target:  5'- gGACgcgCCguuaaaccuagaagaCGGGcccGGCCGCGGGCGGCc- -3'
miRNA:   3'- -CUGa--GGa--------------GCCU---CCGGCGCCCGCCGag -5'
24624 3' -64.9 NC_005264.1 + 160098 0.69 0.346841
Target:  5'- gGACgcgCCguuaaaccuagaagaCGGGcccGGCCGCGGGCGGCc- -3'
miRNA:   3'- -CUGa--GGa--------------GCCU---CCGGCGCCCGCCGag -5'
24624 3' -64.9 NC_005264.1 + 49044 0.7 0.324748
Target:  5'- -uUUCCcUGGGGGCaGCGGGUGGCg- -3'
miRNA:   3'- cuGAGGaGCCUCCGgCGCCCGCCGag -5'
24624 3' -64.9 NC_005264.1 + 95590 0.71 0.278773
Target:  5'- aGGCUCuCUCGu-GGCUGCGGGauuucgGGCUCu -3'
miRNA:   3'- -CUGAG-GAGCcuCCGGCGCCCg-----CCGAG- -5'
24624 3' -64.9 NC_005264.1 + 66484 0.72 0.21721
Target:  5'- aGACUCaaugCUUGGcGGGCUGCGcGGCGcGCUCg -3'
miRNA:   3'- -CUGAG----GAGCC-UCCGGCGC-CCGC-CGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.