miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24624 5' -54.2 NC_005264.1 + 65235 0.66 0.968312
Target:  5'- -uGAGCCGUAGCcgccGcgGC-CGAgGAAGCg -3'
miRNA:   3'- gcCUCGGCGUUG----CuaCGaGCU-CUUCG- -5'
24624 5' -54.2 NC_005264.1 + 138381 0.66 0.968312
Target:  5'- ---cGCCG--ACGAUGUUCGAGGgcAGCu -3'
miRNA:   3'- gccuCGGCguUGCUACGAGCUCU--UCG- -5'
24624 5' -54.2 NC_005264.1 + 35759 0.66 0.968312
Target:  5'- uGcGGCCGCGACG-UGggUGAaGAGGCg -3'
miRNA:   3'- gCcUCGGCGUUGCuACgaGCU-CUUCG- -5'
24624 5' -54.2 NC_005264.1 + 154785 0.66 0.968312
Target:  5'- uGcGGCCGCGACG-UGggUGAaGAGGCg -3'
miRNA:   3'- gCcUCGGCGUUGCuACgaGCU-CUUCG- -5'
24624 5' -54.2 NC_005264.1 + 139019 0.66 0.968312
Target:  5'- gGGAGCUGCGAgGAcGa-UGAGAAGg -3'
miRNA:   3'- gCCUCGGCGUUgCUaCgaGCUCUUCg -5'
24624 5' -54.2 NC_005264.1 + 19503 0.66 0.968312
Target:  5'- aGGuuccAGCUGCcagacGACGAgaaGCUCGGGAcGGCc -3'
miRNA:   3'- gCC----UCGGCG-----UUGCUa--CGAGCUCU-UCG- -5'
24624 5' -54.2 NC_005264.1 + 71536 0.66 0.965153
Target:  5'- uGGAGCUGUAcCGccUGCUgGcGGAGCu -3'
miRNA:   3'- gCCUCGGCGUuGCu-ACGAgCuCUUCG- -5'
24624 5' -54.2 NC_005264.1 + 70662 0.66 0.965153
Target:  5'- cCGuGGCCGCGGCGccGC-CGGcAGGCa -3'
miRNA:   3'- -GCcUCGGCGUUGCuaCGaGCUcUUCG- -5'
24624 5' -54.2 NC_005264.1 + 54922 0.66 0.965153
Target:  5'- gCGGcGCUGCuGGCGAacgGCUgCGAGuGGCu -3'
miRNA:   3'- -GCCuCGGCG-UUGCUa--CGA-GCUCuUCG- -5'
24624 5' -54.2 NC_005264.1 + 90657 0.66 0.965153
Target:  5'- gCGGAGaCCGCAuugcugGCGGcuaUGaUCGAGucuAGCg -3'
miRNA:   3'- -GCCUC-GGCGU------UGCU---ACgAGCUCu--UCG- -5'
24624 5' -54.2 NC_005264.1 + 132768 0.66 0.965153
Target:  5'- cCGGGcGCgGCGGCGccGa-CGAGggGCu -3'
miRNA:   3'- -GCCU-CGgCGUUGCuaCgaGCUCuuCG- -5'
24624 5' -54.2 NC_005264.1 + 129598 0.66 0.961779
Target:  5'- aGGcGCUGCGGCGcgGCg-GcGAAGCu -3'
miRNA:   3'- gCCuCGGCGUUGCuaCGagCuCUUCG- -5'
24624 5' -54.2 NC_005264.1 + 120124 0.66 0.961779
Target:  5'- uGGGG-CGCAGCGA-GCagGAGGacggAGCg -3'
miRNA:   3'- gCCUCgGCGUUGCUaCGagCUCU----UCG- -5'
24624 5' -54.2 NC_005264.1 + 38417 0.66 0.958184
Target:  5'- gCGGAGCaCGCGcucuGCGAguucCUUGucuGAGGCa -3'
miRNA:   3'- -GCCUCG-GCGU----UGCUac--GAGCu--CUUCG- -5'
24624 5' -54.2 NC_005264.1 + 152845 0.66 0.958184
Target:  5'- aCGGGGCuCGU--CGAggGCUCGuuGGGCu -3'
miRNA:   3'- -GCCUCG-GCGuuGCUa-CGAGCucUUCG- -5'
24624 5' -54.2 NC_005264.1 + 81888 0.66 0.958184
Target:  5'- uGGcGCCuugGCGGCGAUGggCGGGcGAGCc -3'
miRNA:   3'- gCCuCGG---CGUUGCUACgaGCUC-UUCG- -5'
24624 5' -54.2 NC_005264.1 + 33819 0.66 0.958184
Target:  5'- aCGGGGCuCGU--CGAggGCUCGuuGGGCu -3'
miRNA:   3'- -GCCUCG-GCGuuGCUa-CGAGCucUUCG- -5'
24624 5' -54.2 NC_005264.1 + 104325 0.66 0.958184
Target:  5'- -uGAGgCGCGACGccGCUuaCGAGGAGg -3'
miRNA:   3'- gcCUCgGCGUUGCuaCGA--GCUCUUCg -5'
24624 5' -54.2 NC_005264.1 + 19091 0.66 0.958184
Target:  5'- gGGAGCCaggacugcaccGCGGCGgcGCg-GAGAcgAGCa -3'
miRNA:   3'- gCCUCGG-----------CGUUGCuaCGagCUCU--UCG- -5'
24624 5' -54.2 NC_005264.1 + 107189 0.66 0.957813
Target:  5'- cCGGGGCCGCcaaaacuaaaggcGGCGgcGCgcgCGGuuGGCa -3'
miRNA:   3'- -GCCUCGGCG-------------UUGCuaCGa--GCUcuUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.