Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24625 | 3' | -51.2 | NC_005264.1 | + | 135376 | 0.66 | 0.992448 |
Target: 5'- gAGaa-AAUGUCCUUuGCUGCGccGCUCg -3' miRNA: 3'- -UCgcgUUACAGGAGuUGACGCu-UGAG- -5' |
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24625 | 3' | -51.2 | NC_005264.1 | + | 133592 | 0.66 | 0.992121 |
Target: 5'- uGCGCGccgcagucuccgcuGUGcUCCUCGACcGCuGGCUCc -3' miRNA: 3'- uCGCGU--------------UAC-AGGAGUUGaCGcUUGAG- -5' |
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24625 | 3' | -51.2 | NC_005264.1 | + | 149535 | 0.66 | 0.991317 |
Target: 5'- cGCGCGGccGUCCUCcg--GgGAGCUCc -3' miRNA: 3'- uCGCGUUa-CAGGAGuugaCgCUUGAG- -5' |
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24625 | 3' | -51.2 | NC_005264.1 | + | 6987 | 0.66 | 0.991317 |
Target: 5'- uGGCGCGggGUUgUCc-CUGCGGGCg- -3' miRNA: 3'- -UCGCGUuaCAGgAGuuGACGCUUGag -5' |
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24625 | 3' | -51.2 | NC_005264.1 | + | 58376 | 0.66 | 0.991317 |
Target: 5'- cGGCGCGAuaugcgccggauUGUCCaaGACUG-GGACUUc -3' miRNA: 3'- -UCGCGUU------------ACAGGagUUGACgCUUGAG- -5' |
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24625 | 3' | -51.2 | NC_005264.1 | + | 30508 | 0.66 | 0.991317 |
Target: 5'- cGCGCGGccGUCCUCcg--GgGAGCUCc -3' miRNA: 3'- uCGCGUUa-CAGGAGuugaCgCUUGAG- -5' |
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24625 | 3' | -51.2 | NC_005264.1 | + | 52212 | 0.66 | 0.988803 |
Target: 5'- gGGCGCGGUGgcgcgagcugguacgCCUUGAaaGCGAACg- -3' miRNA: 3'- -UCGCGUUACa--------------GGAGUUgaCGCUUGag -5' |
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24625 | 3' | -51.2 | NC_005264.1 | + | 58507 | 0.66 | 0.988657 |
Target: 5'- gAGCGCGGUgcGUCCUCGGaUGcCGggUUg -3' miRNA: 3'- -UCGCGUUA--CAGGAGUUgAC-GCuuGAg -5' |
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24625 | 3' | -51.2 | NC_005264.1 | + | 71515 | 0.66 | 0.988657 |
Target: 5'- aGGcCGCGGUGcgCCUCGACUugGAGCUg -3' miRNA: 3'- -UC-GCGUUACa-GGAGUUGAcgCUUGAg -5' |
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24625 | 3' | -51.2 | NC_005264.1 | + | 89549 | 0.67 | 0.98353 |
Target: 5'- cGgGCAGUGUCCg-----GCGAGCUUu -3' miRNA: 3'- uCgCGUUACAGGaguugaCGCUUGAG- -5' |
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24625 | 3' | -51.2 | NC_005264.1 | + | 2910 | 0.67 | 0.981481 |
Target: 5'- gGGC-CAcccuUGUCacgCUUGGCUGCGAGCUCc -3' miRNA: 3'- -UCGcGUu---ACAG---GAGUUGACGCUUGAG- -5' |
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24625 | 3' | -51.2 | NC_005264.1 | + | 63881 | 0.67 | 0.979246 |
Target: 5'- --aGUAGaGUUC-CGGCUGCGAGCUCc -3' miRNA: 3'- ucgCGUUaCAGGaGUUGACGCUUGAG- -5' |
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24625 | 3' | -51.2 | NC_005264.1 | + | 132265 | 0.67 | 0.979246 |
Target: 5'- uGUGC-GUGUCCUCucCUGCGAc--- -3' miRNA: 3'- uCGCGuUACAGGAGuuGACGCUugag -5' |
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24625 | 3' | -51.2 | NC_005264.1 | + | 62611 | 0.68 | 0.971345 |
Target: 5'- cGGCGCGGacguUCCgagCAACUGCgccccgcgGAGCUCa -3' miRNA: 3'- -UCGCGUUac--AGGa--GUUGACG--------CUUGAG- -5' |
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24625 | 3' | -51.2 | NC_005264.1 | + | 87136 | 0.68 | 0.97045 |
Target: 5'- gGGCGCAccaGUCUUCGcgccgaaagacggcGCUGCGcgcGACUCc -3' miRNA: 3'- -UCGCGUua-CAGGAGU--------------UGACGC---UUGAG- -5' |
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24625 | 3' | -51.2 | NC_005264.1 | + | 111906 | 0.68 | 0.968285 |
Target: 5'- cGCGCGAU-UCCUCGACcaguucGUGGugUCg -3' miRNA: 3'- uCGCGUUAcAGGAGUUGa-----CGCUugAG- -5' |
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24625 | 3' | -51.2 | NC_005264.1 | + | 52950 | 0.68 | 0.961484 |
Target: 5'- cGC-CGAUGcagcgCCUCuacgcggcgguGCUGCGAACUCa -3' miRNA: 3'- uCGcGUUACa----GGAGu----------UGACGCUUGAG- -5' |
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24625 | 3' | -51.2 | NC_005264.1 | + | 64068 | 0.68 | 0.961484 |
Target: 5'- aGGCGCAGg--UCUCGGCcUGUGggUUCu -3' miRNA: 3'- -UCGCGUUacaGGAGUUG-ACGCuuGAG- -5' |
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24625 | 3' | -51.2 | NC_005264.1 | + | 64893 | 0.68 | 0.961484 |
Target: 5'- cGGCGgaGAUGaCCUCGAC-GCGAAgCUCu -3' miRNA: 3'- -UCGCg-UUACaGGAGUUGaCGCUU-GAG- -5' |
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24625 | 3' | -51.2 | NC_005264.1 | + | 139043 | 0.69 | 0.949488 |
Target: 5'- cGCGCGAUGaacgCUUCAGCUcGCGGAggCg -3' miRNA: 3'- uCGCGUUACa---GGAGUUGA-CGCUUgaG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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