miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24625 3' -51.2 NC_005264.1 + 76597 1.11 0.005536
Target:  5'- gAGCGCAAUGUCCUCAACUGCGAACUCg -3'
miRNA:   3'- -UCGCGUUACAGGAGUUGACGCUUGAG- -5'
24625 3' -51.2 NC_005264.1 + 36508 0.75 0.69311
Target:  5'- aAGCGCGcgG-CCUCGACgagGCGGGCg- -3'
miRNA:   3'- -UCGCGUuaCaGGAGUUGa--CGCUUGag -5'
24625 3' -51.2 NC_005264.1 + 128895 0.74 0.724328
Target:  5'- -cCGCuc-GUCCUCGACgacgGCGGGCUCa -3'
miRNA:   3'- ucGCGuuaCAGGAGUUGa---CGCUUGAG- -5'
24625 3' -51.2 NC_005264.1 + 72517 0.74 0.764697
Target:  5'- gAGCGCGGUGUCC---ACUG-GGACUCc -3'
miRNA:   3'- -UCGCGUUACAGGaguUGACgCUUGAG- -5'
24625 3' -51.2 NC_005264.1 + 34757 0.72 0.830045
Target:  5'- cAGCGCGucggGUCCUCAAC-GCuaGGCUCg -3'
miRNA:   3'- -UCGCGUua--CAGGAGUUGaCGc-UUGAG- -5'
24625 3' -51.2 NC_005264.1 + 153783 0.72 0.830045
Target:  5'- cAGCGCGucggGUCCUCAAC-GCuaGGCUCg -3'
miRNA:   3'- -UCGCGUua--CAGGAGUUGaCGc-UUGAG- -5'
24625 3' -51.2 NC_005264.1 + 156033 0.72 0.863304
Target:  5'- uGCGCGGUGgacgCCUCAugGCUGCuaGAUUCg -3'
miRNA:   3'- uCGCGUUACa---GGAGU--UGACGc-UUGAG- -5'
24625 3' -51.2 NC_005264.1 + 29058 0.71 0.885904
Target:  5'- aGGCGCGccuguagcaaagAUGUCCUCGGCguaGAugUCu -3'
miRNA:   3'- -UCGCGU------------UACAGGAGUUGacgCUugAG- -5'
24625 3' -51.2 NC_005264.1 + 9382 0.7 0.929428
Target:  5'- gAGCGCGAUuaugagGUCCUCGugcagcgccaaugACUGCGc-CUCa -3'
miRNA:   3'- -UCGCGUUA------CAGGAGU-------------UGACGCuuGAG- -5'
24625 3' -51.2 NC_005264.1 + 73130 0.69 0.935235
Target:  5'- aGGCGUAcgGUCUguaCAACUGCcAGCUg -3'
miRNA:   3'- -UCGCGUuaCAGGa--GUUGACGcUUGAg -5'
24625 3' -51.2 NC_005264.1 + 160208 0.69 0.946821
Target:  5'- gAGCGCAAccugcccgcugacacUGUUCUUAACUuuuGCGGACa- -3'
miRNA:   3'- -UCGCGUU---------------ACAGGAGUUGA---CGCUUGag -5'
24625 3' -51.2 NC_005264.1 + 139043 0.69 0.949488
Target:  5'- cGCGCGAUGaacgCUUCAGCUcGCGGAggCg -3'
miRNA:   3'- uCGCGUUACa---GGAGUUGA-CGCUUgaG- -5'
24625 3' -51.2 NC_005264.1 + 64893 0.68 0.961484
Target:  5'- cGGCGgaGAUGaCCUCGAC-GCGAAgCUCu -3'
miRNA:   3'- -UCGCg-UUACaGGAGUUGaCGCUU-GAG- -5'
24625 3' -51.2 NC_005264.1 + 52950 0.68 0.961484
Target:  5'- cGC-CGAUGcagcgCCUCuacgcggcgguGCUGCGAACUCa -3'
miRNA:   3'- uCGcGUUACa----GGAGu----------UGACGCUUGAG- -5'
24625 3' -51.2 NC_005264.1 + 64068 0.68 0.961484
Target:  5'- aGGCGCAGg--UCUCGGCcUGUGggUUCu -3'
miRNA:   3'- -UCGCGUUacaGGAGUUG-ACGCuuGAG- -5'
24625 3' -51.2 NC_005264.1 + 111906 0.68 0.968285
Target:  5'- cGCGCGAU-UCCUCGACcaguucGUGGugUCg -3'
miRNA:   3'- uCGCGUUAcAGGAGUUGa-----CGCUugAG- -5'
24625 3' -51.2 NC_005264.1 + 87136 0.68 0.97045
Target:  5'- gGGCGCAccaGUCUUCGcgccgaaagacggcGCUGCGcgcGACUCc -3'
miRNA:   3'- -UCGCGUua-CAGGAGU--------------UGACGC---UUGAG- -5'
24625 3' -51.2 NC_005264.1 + 62611 0.68 0.971345
Target:  5'- cGGCGCGGacguUCCgagCAACUGCgccccgcgGAGCUCa -3'
miRNA:   3'- -UCGCGUUac--AGGa--GUUGACG--------CUUGAG- -5'
24625 3' -51.2 NC_005264.1 + 63881 0.67 0.979246
Target:  5'- --aGUAGaGUUC-CGGCUGCGAGCUCc -3'
miRNA:   3'- ucgCGUUaCAGGaGUUGACGCUUGAG- -5'
24625 3' -51.2 NC_005264.1 + 132265 0.67 0.979246
Target:  5'- uGUGC-GUGUCCUCucCUGCGAc--- -3'
miRNA:   3'- uCGCGuUACAGGAGuuGACGCUugag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.