miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24625 5' -53.4 NC_005264.1 + 80757 0.66 0.976751
Target:  5'- gGCGGGaacgcucgaccccucCGCGCAGAGAucuGGccuggccguaGCCAUCGAu -3'
miRNA:   3'- -UGCUC---------------GUGCGUCUCU---UC----------UGGUAGCUc -5'
24625 5' -53.4 NC_005264.1 + 151886 0.66 0.975749
Target:  5'- cGCGGGCAUcagcuguaugugGCGGAGggGACgG-CGGc -3'
miRNA:   3'- -UGCUCGUG------------CGUCUCuuCUGgUaGCUc -5'
24625 5' -53.4 NC_005264.1 + 126305 0.66 0.974976
Target:  5'- uCGGGCGCGCGGccGAuGGCUccugcgcccgccucGUCGAGg -3'
miRNA:   3'- uGCUCGUGCGUCu-CUuCUGG--------------UAGCUC- -5'
24625 5' -53.4 NC_005264.1 + 2501 0.66 0.974976
Target:  5'- gGCGGGCcucgcgcgacuucaGCGCGGGGGGcGACUuccCGAGa -3'
miRNA:   3'- -UGCUCG--------------UGCGUCUCUU-CUGGua-GCUC- -5'
24625 5' -53.4 NC_005264.1 + 121528 0.66 0.974976
Target:  5'- gGCGGGCcucgcgcgacuucaGCGCGGGGGGcGACUuccCGAGa -3'
miRNA:   3'- -UGCUCG--------------UGCGUCUCUU-CUGGua-GCUC- -5'
24625 5' -53.4 NC_005264.1 + 99743 0.66 0.971421
Target:  5'- uACGAacGCAUGUuggacucgcccggcGAGGAGACCAUaCGGGa -3'
miRNA:   3'- -UGCU--CGUGCGu-------------CUCUUCUGGUA-GCUC- -5'
24625 5' -53.4 NC_005264.1 + 156424 0.66 0.970258
Target:  5'- cGCGAgaguGUACGUGGAGGAGuucggcaugGCCGUgGAGc -3'
miRNA:   3'- -UGCU----CGUGCGUCUCUUC---------UGGUAgCUC- -5'
24625 5' -53.4 NC_005264.1 + 37397 0.66 0.970258
Target:  5'- cGCGAgaguGUACGUGGAGGAGuucggcaugGCCGUgGAGc -3'
miRNA:   3'- -UGCU----CGUGCGUCUCUUC---------UGGUAgCUC- -5'
24625 5' -53.4 NC_005264.1 + 78501 0.66 0.970258
Target:  5'- cCGGuGCACGCGGuGAGGccaguaACCAUCGc- -3'
miRNA:   3'- uGCU-CGUGCGUCuCUUC------UGGUAGCuc -5'
24625 5' -53.4 NC_005264.1 + 142822 0.66 0.967201
Target:  5'- uGCGAGCGCGCcGuGGuAGACCcUCuagGAGa -3'
miRNA:   3'- -UGCUCGUGCGuCuCU-UCUGGuAG---CUC- -5'
24625 5' -53.4 NC_005264.1 + 6470 0.66 0.963929
Target:  5'- gGCGcGGCgaACGuCGGGGugcgcGGCCAUCGAGg -3'
miRNA:   3'- -UGC-UCG--UGC-GUCUCuu---CUGGUAGCUC- -5'
24625 5' -53.4 NC_005264.1 + 125497 0.66 0.963929
Target:  5'- gGCGcGGCgaACGuCGGGGugcgcGGCCAUCGAGg -3'
miRNA:   3'- -UGC-UCG--UGC-GUCUCuu---CUGGUAGCUC- -5'
24625 5' -53.4 NC_005264.1 + 121853 0.66 0.963929
Target:  5'- aACGGGUugGCGGAGGgccGGucgcgcucgcGCCGUCGc- -3'
miRNA:   3'- -UGCUCGugCGUCUCU---UC----------UGGUAGCuc -5'
24625 5' -53.4 NC_005264.1 + 34271 0.66 0.963929
Target:  5'- cGCGGGCgACGCGucGAAGAgUAaguUCGAGg -3'
miRNA:   3'- -UGCUCG-UGCGUcuCUUCUgGU---AGCUC- -5'
24625 5' -53.4 NC_005264.1 + 2827 0.66 0.963929
Target:  5'- aACGGGUugGCGGAGGgccGGucgcgcucgcGCCGUCGc- -3'
miRNA:   3'- -UGCUCGugCGUCUCU---UC----------UGGUAGCuc -5'
24625 5' -53.4 NC_005264.1 + 153298 0.66 0.963929
Target:  5'- cGCGGGCgACGCGucGAAGAgUAaguUCGAGg -3'
miRNA:   3'- -UGCUCG-UGCGUcuCUUCUgGU---AGCUC- -5'
24625 5' -53.4 NC_005264.1 + 155223 0.67 0.96186
Target:  5'- gGCGAaagagcagaccgcauGCGCGCAGAccAGAgCCcgCGAGg -3'
miRNA:   3'- -UGCU---------------CGUGCGUCUcuUCU-GGuaGCUC- -5'
24625 5' -53.4 NC_005264.1 + 36196 0.67 0.96186
Target:  5'- gGCGAaagagcagaccgcauGCGCGCAGAccAGAgCCcgCGAGg -3'
miRNA:   3'- -UGCU---------------CGUGCGUCUcuUCU-GGuaGCUC- -5'
24625 5' -53.4 NC_005264.1 + 137394 0.67 0.960436
Target:  5'- cCGAGUACGCGGuccuaggcacGAAGGCCAaUCGu- -3'
miRNA:   3'- uGCUCGUGCGUCu---------CUUCUGGU-AGCuc -5'
24625 5' -53.4 NC_005264.1 + 75345 0.67 0.960436
Target:  5'- aAC-AGCGCGUAGuAGAAGAUCuuGUUGAGc -3'
miRNA:   3'- -UGcUCGUGCGUC-UCUUCUGG--UAGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.