miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24625 5' -53.4 NC_005264.1 + 76631 1.09 0.005028
Target:  5'- cACGAGCACGCAGAGAAGACCAUCGAGg -3'
miRNA:   3'- -UGCUCGUGCGUCUCUUCUGGUAGCUC- -5'
24625 5' -53.4 NC_005264.1 + 129368 0.81 0.293536
Target:  5'- cACGAGUGCGCGGGGAaaAGACCGUggCGGGa -3'
miRNA:   3'- -UGCUCGUGCGUCUCU--UCUGGUA--GCUC- -5'
24625 5' -53.4 NC_005264.1 + 5012 0.81 0.307648
Target:  5'- -gGAGCgguuuGCGCAGAGGAGGCCA-CGAGg -3'
miRNA:   3'- ugCUCG-----UGCGUCUCUUCUGGUaGCUC- -5'
24625 5' -53.4 NC_005264.1 + 136588 0.76 0.555256
Target:  5'- aGCGGGU-CGUAGAGAGGGCCGagGAGc -3'
miRNA:   3'- -UGCUCGuGCGUCUCUUCUGGUagCUC- -5'
24625 5' -53.4 NC_005264.1 + 140040 0.75 0.5963
Target:  5'- cGCGAcaggauGCAgGUAGAGAAGACCAUgGAc -3'
miRNA:   3'- -UGCU------CGUgCGUCUCUUCUGGUAgCUc -5'
24625 5' -53.4 NC_005264.1 + 913 0.74 0.626352
Target:  5'- cGCGGGC-CGCuggggggaaggucGGAGAGGGCuCGUCGGGg -3'
miRNA:   3'- -UGCUCGuGCG-------------UCUCUUCUG-GUAGCUC- -5'
24625 5' -53.4 NC_005264.1 + 119939 0.74 0.626352
Target:  5'- cGCGGGC-CGCuggggggaaggucGGAGAGGGCuCGUCGGGg -3'
miRNA:   3'- -UGCUCGuGCG-------------UCUCUUCUG-GUAGCUC- -5'
24625 5' -53.4 NC_005264.1 + 45775 0.74 0.637772
Target:  5'- -gGGGCGCGCGGAGuGGGgaGUCGAGa -3'
miRNA:   3'- ugCUCGUGCGUCUCuUCUggUAGCUC- -5'
24625 5' -53.4 NC_005264.1 + 79879 0.74 0.637772
Target:  5'- cACGGGgGCGCGGcGgcGACCGUCGcAGg -3'
miRNA:   3'- -UGCUCgUGCGUCuCuuCUGGUAGC-UC- -5'
24625 5' -53.4 NC_005264.1 + 20264 0.74 0.658513
Target:  5'- gGCGcGGCcuCGCGGAGggGACCGUCu-- -3'
miRNA:   3'- -UGC-UCGu-GCGUCUCuuCUGGUAGcuc -5'
24625 5' -53.4 NC_005264.1 + 4660 0.73 0.679167
Target:  5'- cACGAGCACGauCAGGGAAuACCugcGUCGGGg -3'
miRNA:   3'- -UGCUCGUGC--GUCUCUUcUGG---UAGCUC- -5'
24625 5' -53.4 NC_005264.1 + 123687 0.73 0.679167
Target:  5'- cACGAGCACGauCAGGGAAuACCugcGUCGGGg -3'
miRNA:   3'- -UGCUCGUGC--GUCUCUUcUGG---UAGCUC- -5'
24625 5' -53.4 NC_005264.1 + 155848 0.73 0.709826
Target:  5'- cGCGGGcCACGCcgaGGAGGAGACCGacagCGAc -3'
miRNA:   3'- -UGCUC-GUGCG---UCUCUUCUGGUa---GCUc -5'
24625 5' -53.4 NC_005264.1 + 36822 0.73 0.709826
Target:  5'- cGCGGGcCACGCcgaGGAGGAGACCGacagCGAc -3'
miRNA:   3'- -UGCUC-GUGCG---UCUCUUCUGGUa---GCUc -5'
24625 5' -53.4 NC_005264.1 + 129413 0.73 0.729942
Target:  5'- cCGGGCgACGaCGGGGAgGGAUCGUCGAGc -3'
miRNA:   3'- uGCUCG-UGC-GUCUCU-UCUGGUAGCUC- -5'
24625 5' -53.4 NC_005264.1 + 10386 0.73 0.729942
Target:  5'- cCGGGCgACGaCGGGGAgGGAUCGUCGAGc -3'
miRNA:   3'- uGCUCG-UGC-GUCUCU-UCUGGUAGCUC- -5'
24625 5' -53.4 NC_005264.1 + 95028 0.72 0.749709
Target:  5'- -aGGGUACuCA-AGAAGACCGUCGAGg -3'
miRNA:   3'- ugCUCGUGcGUcUCUUCUGGUAGCUC- -5'
24625 5' -53.4 NC_005264.1 + 37793 0.72 0.778539
Target:  5'- gGCGAGCG-GCGGAGAAGaggcgcgccGCCGaCGAGu -3'
miRNA:   3'- -UGCUCGUgCGUCUCUUC---------UGGUaGCUC- -5'
24625 5' -53.4 NC_005264.1 + 95737 0.71 0.787892
Target:  5'- cGCGGGCGC-UGGAGAcGGCCAUgGGGg -3'
miRNA:   3'- -UGCUCGUGcGUCUCUuCUGGUAgCUC- -5'
24625 5' -53.4 NC_005264.1 + 80015 0.71 0.822906
Target:  5'- gGCGcGGCACaucuccgguuggaGCGGGGGAGACCAcugucgcgUCGAGc -3'
miRNA:   3'- -UGC-UCGUG-------------CGUCUCUUCUGGU--------AGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.