miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24625 5' -53.4 NC_005264.1 + 52675 0.67 0.956715
Target:  5'- -aGGGCACGgAGAGAuucguGGCCGauacCGAGu -3'
miRNA:   3'- ugCUCGUGCgUCUCUu----CUGGUa---GCUC- -5'
24625 5' -53.4 NC_005264.1 + 47591 0.67 0.948575
Target:  5'- cGCGGGgACGCguuGGGGGAGACUcgCGcGa -3'
miRNA:   3'- -UGCUCgUGCG---UCUCUUCUGGuaGCuC- -5'
24625 5' -53.4 NC_005264.1 + 30894 0.67 0.944148
Target:  5'- uCGGGgACGCgucgGGGGAGGACUG-CGAGg -3'
miRNA:   3'- uGCUCgUGCG----UCUCUUCUGGUaGCUC- -5'
24625 5' -53.4 NC_005264.1 + 149920 0.67 0.944148
Target:  5'- uCGGGgACGCgucgGGGGAGGACUG-CGAGg -3'
miRNA:   3'- uGCUCgUGCG----UCUCUUCUGGUaGCUC- -5'
24625 5' -53.4 NC_005264.1 + 90650 0.67 0.937544
Target:  5'- -aGGGCGCGCGGAGAccgcauugcuggcGGCUaugAUCGAGu -3'
miRNA:   3'- ugCUCGUGCGUCUCUu------------CUGG---UAGCUC- -5'
24625 5' -53.4 NC_005264.1 + 40321 0.68 0.934567
Target:  5'- gGCGAGCGCaGCAGuGucgGGACCAg-GGGu -3'
miRNA:   3'- -UGCUCGUG-CGUCuCu--UCUGGUagCUC- -5'
24625 5' -53.4 NC_005264.1 + 117730 0.68 0.934567
Target:  5'- cCGAGCAC--AGAGAAGuCCGUCGc- -3'
miRNA:   3'- uGCUCGUGcgUCUCUUCuGGUAGCuc -5'
24625 5' -53.4 NC_005264.1 + 100825 0.68 0.924005
Target:  5'- -aGAGCGCGaCAGGGAcGACgG-CGAGu -3'
miRNA:   3'- ugCUCGUGC-GUCUCUuCUGgUaGCUC- -5'
24625 5' -53.4 NC_005264.1 + 105595 0.68 0.922336
Target:  5'- uCGAGCGCcucaagaccgugguGCGuGGGAaauugAGGCCGUCGGGg -3'
miRNA:   3'- uGCUCGUG--------------CGU-CUCU-----UCUGGUAGCUC- -5'
24625 5' -53.4 NC_005264.1 + 30572 0.68 0.918355
Target:  5'- gGCGGGguCGCAgGAGAGGACaCGcacaaCGAGa -3'
miRNA:   3'- -UGCUCguGCGU-CUCUUCUG-GUa----GCUC- -5'
24625 5' -53.4 NC_005264.1 + 99032 0.68 0.91246
Target:  5'- uCGAGCGCGCGGcAGAaaucguGGACgCgAUUGAGa -3'
miRNA:   3'- uGCUCGUGCGUC-UCU------UCUG-G-UAGCUC- -5'
24625 5' -53.4 NC_005264.1 + 84894 0.68 0.91246
Target:  5'- aGCGGGcCGCGCAGgacgggagggcgGGAAGAgCCAggcgCGGGa -3'
miRNA:   3'- -UGCUC-GUGCGUC------------UCUUCU-GGUa---GCUC- -5'
24625 5' -53.4 NC_005264.1 + 48902 0.68 0.91246
Target:  5'- aGCG-GCACGCGGAaaauugGAAGGCCA--GAGu -3'
miRNA:   3'- -UGCuCGUGCGUCU------CUUCUGGUagCUC- -5'
24625 5' -53.4 NC_005264.1 + 31194 0.68 0.91246
Target:  5'- gGCGGGCAcCGCAGAccGAGgcguGACCAUCu-- -3'
miRNA:   3'- -UGCUCGU-GCGUCU--CUU----CUGGUAGcuc -5'
24625 5' -53.4 NC_005264.1 + 125635 0.69 0.906321
Target:  5'- gGCGAGCGCGUGG-GAAauuaugcccacGGCCAcgCGGGg -3'
miRNA:   3'- -UGCUCGUGCGUCuCUU-----------CUGGUa-GCUC- -5'
24625 5' -53.4 NC_005264.1 + 158249 0.69 0.906321
Target:  5'- cGCGGcGCugGCGGGGAGGGCCu----- -3'
miRNA:   3'- -UGCU-CGugCGUCUCUUCUGGuagcuc -5'
24625 5' -53.4 NC_005264.1 + 103516 0.69 0.906321
Target:  5'- cGCGGGagaACGCAGAGA-GAC--UCGAGc -3'
miRNA:   3'- -UGCUCg--UGCGUCUCUuCUGguAGCUC- -5'
24625 5' -53.4 NC_005264.1 + 6608 0.69 0.906321
Target:  5'- gGCGAGCGCGUGG-GAAauuaugcccacGGCCAcgCGGGg -3'
miRNA:   3'- -UGCUCGUGCGUCuCUU-----------CUGGUa-GCUC- -5'
24625 5' -53.4 NC_005264.1 + 39222 0.69 0.906321
Target:  5'- cGCGGcGCugGCGGGGAGGGCCu----- -3'
miRNA:   3'- -UGCU-CGugCGUCUCUUCUGGuagcuc -5'
24625 5' -53.4 NC_005264.1 + 42112 0.69 0.893322
Target:  5'- uACGGGCACcugGCAGGGugugcgcuGAGACCGcaCGAGa -3'
miRNA:   3'- -UGCUCGUG---CGUCUC--------UUCUGGUa-GCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.