miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24625 5' -53.4 NC_005264.1 + 913 0.74 0.626352
Target:  5'- cGCGGGC-CGCuggggggaaggucGGAGAGGGCuCGUCGGGg -3'
miRNA:   3'- -UGCUCGuGCG-------------UCUCUUCUG-GUAGCUC- -5'
24625 5' -53.4 NC_005264.1 + 2501 0.66 0.974976
Target:  5'- gGCGGGCcucgcgcgacuucaGCGCGGGGGGcGACUuccCGAGa -3'
miRNA:   3'- -UGCUCG--------------UGCGUCUCUU-CUGGua-GCUC- -5'
24625 5' -53.4 NC_005264.1 + 2827 0.66 0.963929
Target:  5'- aACGGGUugGCGGAGGgccGGucgcgcucgcGCCGUCGc- -3'
miRNA:   3'- -UGCUCGugCGUCUCU---UC----------UGGUAGCuc -5'
24625 5' -53.4 NC_005264.1 + 2889 0.7 0.848828
Target:  5'- gGCGcGGCGCgGCGGGGAGGGCgAcggCGAGa -3'
miRNA:   3'- -UGC-UCGUG-CGUCUCUUCUGgUa--GCUC- -5'
24625 5' -53.4 NC_005264.1 + 4660 0.73 0.679167
Target:  5'- cACGAGCACGauCAGGGAAuACCugcGUCGGGg -3'
miRNA:   3'- -UGCUCGUGC--GUCUCUUcUGG---UAGCUC- -5'
24625 5' -53.4 NC_005264.1 + 5012 0.81 0.307648
Target:  5'- -gGAGCgguuuGCGCAGAGGAGGCCA-CGAGg -3'
miRNA:   3'- ugCUCG-----UGCGUCUCUUCUGGUaGCUC- -5'
24625 5' -53.4 NC_005264.1 + 6470 0.66 0.963929
Target:  5'- gGCGcGGCgaACGuCGGGGugcgcGGCCAUCGAGg -3'
miRNA:   3'- -UGC-UCG--UGC-GUCUCuu---CUGGUAGCUC- -5'
24625 5' -53.4 NC_005264.1 + 6608 0.69 0.906321
Target:  5'- gGCGAGCGCGUGG-GAAauuaugcccacGGCCAcgCGGGg -3'
miRNA:   3'- -UGCUCGUGCGUCuCUU-----------CUGGUa-GCUC- -5'
24625 5' -53.4 NC_005264.1 + 10386 0.73 0.729942
Target:  5'- cCGGGCgACGaCGGGGAgGGAUCGUCGAGc -3'
miRNA:   3'- uGCUCG-UGC-GUCUCU-UCUGGUAGCUC- -5'
24625 5' -53.4 NC_005264.1 + 20264 0.74 0.658513
Target:  5'- gGCGcGGCcuCGCGGAGggGACCGUCu-- -3'
miRNA:   3'- -UGC-UCGu-GCGUCUCuuCUGGUAGcuc -5'
24625 5' -53.4 NC_005264.1 + 30572 0.68 0.918355
Target:  5'- gGCGGGguCGCAgGAGAGGACaCGcacaaCGAGa -3'
miRNA:   3'- -UGCUCguGCGU-CUCUUCUG-GUa----GCUC- -5'
24625 5' -53.4 NC_005264.1 + 30894 0.67 0.944148
Target:  5'- uCGGGgACGCgucgGGGGAGGACUG-CGAGg -3'
miRNA:   3'- uGCUCgUGCG----UCUCUUCUGGUaGCUC- -5'
24625 5' -53.4 NC_005264.1 + 31194 0.68 0.91246
Target:  5'- gGCGGGCAcCGCAGAccGAGgcguGACCAUCu-- -3'
miRNA:   3'- -UGCUCGU-GCGUCU--CUU----CUGGUAGcuc -5'
24625 5' -53.4 NC_005264.1 + 31513 0.7 0.832313
Target:  5'- gGCGgcuccaGGCucGgGCGGGGAGGGCCGUUGGGg -3'
miRNA:   3'- -UGC------UCG--UgCGUCUCUUCUGGUAGCUC- -5'
24625 5' -53.4 NC_005264.1 + 34271 0.66 0.963929
Target:  5'- cGCGGGCgACGCGucGAAGAgUAaguUCGAGg -3'
miRNA:   3'- -UGCUCG-UGCGUcuCUUCUgGU---AGCUC- -5'
24625 5' -53.4 NC_005264.1 + 34395 0.7 0.840668
Target:  5'- gACGGGCGCGgcucgagcuCAGGGAaugagccgAGACCcgCGAGc -3'
miRNA:   3'- -UGCUCGUGC---------GUCUCU--------UCUGGuaGCUC- -5'
24625 5' -53.4 NC_005264.1 + 36196 0.67 0.96186
Target:  5'- gGCGAaagagcagaccgcauGCGCGCAGAccAGAgCCcgCGAGg -3'
miRNA:   3'- -UGCU---------------CGUGCGUCUcuUCU-GGuaGCUC- -5'
24625 5' -53.4 NC_005264.1 + 36822 0.73 0.709826
Target:  5'- cGCGGGcCACGCcgaGGAGGAGACCGacagCGAc -3'
miRNA:   3'- -UGCUC-GUGCG---UCUCUUCUGGUa---GCUc -5'
24625 5' -53.4 NC_005264.1 + 37397 0.66 0.970258
Target:  5'- cGCGAgaguGUACGUGGAGGAGuucggcaugGCCGUgGAGc -3'
miRNA:   3'- -UGCU----CGUGCGUCUCUUC---------UGGUAgCUC- -5'
24625 5' -53.4 NC_005264.1 + 37793 0.72 0.778539
Target:  5'- gGCGAGCG-GCGGAGAAGaggcgcgccGCCGaCGAGu -3'
miRNA:   3'- -UGCUCGUgCGUCUCUUC---------UGGUaGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.