miRNA display CGI


Results 1 - 20 of 70 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24625 5' -53.4 NC_005264.1 + 76631 1.09 0.005028
Target:  5'- cACGAGCACGCAGAGAAGACCAUCGAGg -3'
miRNA:   3'- -UGCUCGUGCGUCUCUUCUGGUAGCUC- -5'
24625 5' -53.4 NC_005264.1 + 158249 0.69 0.906321
Target:  5'- cGCGGcGCugGCGGGGAGGGCCu----- -3'
miRNA:   3'- -UGCU-CGugCGUCUCUUCUGGuagcuc -5'
24625 5' -53.4 NC_005264.1 + 31194 0.68 0.91246
Target:  5'- gGCGGGCAcCGCAGAccGAGgcguGACCAUCu-- -3'
miRNA:   3'- -UGCUCGU-GCGUCU--CUU----CUGGUAGcuc -5'
24625 5' -53.4 NC_005264.1 + 80757 0.66 0.976751
Target:  5'- gGCGGGaacgcucgaccccucCGCGCAGAGAucuGGccuggccguaGCCAUCGAu -3'
miRNA:   3'- -UGCUC---------------GUGCGUCUCU---UC----------UGGUAGCUc -5'
24625 5' -53.4 NC_005264.1 + 45775 0.74 0.637772
Target:  5'- -gGGGCGCGCGGAGuGGGgaGUCGAGa -3'
miRNA:   3'- ugCUCGUGCGUCUCuUCUggUAGCUC- -5'
24625 5' -53.4 NC_005264.1 + 20264 0.74 0.658513
Target:  5'- gGCGcGGCcuCGCGGAGggGACCGUCu-- -3'
miRNA:   3'- -UGC-UCGu-GCGUCUCuuCUGGUAGcuc -5'
24625 5' -53.4 NC_005264.1 + 155848 0.73 0.709826
Target:  5'- cGCGGGcCACGCcgaGGAGGAGACCGacagCGAc -3'
miRNA:   3'- -UGCUC-GUGCG---UCUCUUCUGGUa---GCUc -5'
24625 5' -53.4 NC_005264.1 + 129413 0.73 0.729942
Target:  5'- cCGGGCgACGaCGGGGAgGGAUCGUCGAGc -3'
miRNA:   3'- uGCUCG-UGC-GUCUCU-UCUGGUAGCUC- -5'
24625 5' -53.4 NC_005264.1 + 116437 0.7 0.832313
Target:  5'- gGCGucuGGC-CGCGGGGgcGACgAUCGGGg -3'
miRNA:   3'- -UGC---UCGuGCGUCUCuuCUGgUAGCUC- -5'
24625 5' -53.4 NC_005264.1 + 161139 0.69 0.893322
Target:  5'- uACGGGCACcugGCAGGGugugcgcuGAGACCGcaCGAGa -3'
miRNA:   3'- -UGCUCGUG---CGUCUC--------UUCUGGUa-GCUC- -5'
24625 5' -53.4 NC_005264.1 + 60310 0.7 0.840668
Target:  5'- uCGGGCGCGacCGGGGcguauGGGAUCGUCGAGa -3'
miRNA:   3'- uGCUCGUGC--GUCUC-----UUCUGGUAGCUC- -5'
24625 5' -53.4 NC_005264.1 + 150540 0.7 0.832313
Target:  5'- gGCGgcuccaGGCucGgGCGGGGAGGGCCGUUGGGg -3'
miRNA:   3'- -UGC------UCG--UgCGUCUCUUCUGGUAGCUC- -5'
24625 5' -53.4 NC_005264.1 + 5012 0.81 0.307648
Target:  5'- -gGAGCgguuuGCGCAGAGGAGGCCA-CGAGg -3'
miRNA:   3'- ugCUCG-----UGCGUCUCUUCUGGUaGCUC- -5'
24625 5' -53.4 NC_005264.1 + 121915 0.7 0.848828
Target:  5'- gGCGcGGCGCgGCGGGGAGGGCgAcggCGAGa -3'
miRNA:   3'- -UGC-UCGUG-CGUCUCUUCUGgUa--GCUC- -5'
24625 5' -53.4 NC_005264.1 + 140040 0.75 0.5963
Target:  5'- cGCGAcaggauGCAgGUAGAGAAGACCAUgGAc -3'
miRNA:   3'- -UGCU------CGUgCGUCUCUUCUGGUAgCUc -5'
24625 5' -53.4 NC_005264.1 + 37793 0.72 0.778539
Target:  5'- gGCGAGCG-GCGGAGAAGaggcgcgccGCCGaCGAGu -3'
miRNA:   3'- -UGCUCGUgCGUCUCUUC---------UGGUaGCUC- -5'
24625 5' -53.4 NC_005264.1 + 51976 0.69 0.885068
Target:  5'- cGCGcuCACGCucgaucuucgccGAGAGGACCGUCGGu -3'
miRNA:   3'- -UGCucGUGCGu-----------CUCUUCUGGUAGCUc -5'
24625 5' -53.4 NC_005264.1 + 125635 0.69 0.906321
Target:  5'- gGCGAGCGCGUGG-GAAauuaugcccacGGCCAcgCGGGg -3'
miRNA:   3'- -UGCUCGUGCGUCuCUU-----------CUGGUa-GCUC- -5'
24625 5' -53.4 NC_005264.1 + 119939 0.74 0.626352
Target:  5'- cGCGGGC-CGCuggggggaaggucGGAGAGGGCuCGUCGGGg -3'
miRNA:   3'- -UGCUCGuGCG-------------UCUCUUCUG-GUAGCUC- -5'
24625 5' -53.4 NC_005264.1 + 123687 0.73 0.679167
Target:  5'- cACGAGCACGauCAGGGAAuACCugcGUCGGGg -3'
miRNA:   3'- -UGCUCGUGC--GUCUCUUcUGG---UAGCUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.