miRNA display CGI


Results 1 - 20 of 90 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24626 3' -59.3 NC_005264.1 + 129149 0.66 0.810987
Target:  5'- gCGGCUCGGAGcGAuGCGCGUuAGCcACg -3'
miRNA:   3'- -GCUGGGCCUU-CUcCGCGCGcUCGaUG- -5'
24626 3' -59.3 NC_005264.1 + 105497 0.66 0.810987
Target:  5'- gCGAUCCGGcGGAGgaagaggauGCGCGCGAcGUa-- -3'
miRNA:   3'- -GCUGGGCCuUCUC---------CGCGCGCU-CGaug -5'
24626 3' -59.3 NC_005264.1 + 43386 0.66 0.810987
Target:  5'- aGACgCUaGGGcAGAGGgGCGCGaAGcCUACg -3'
miRNA:   3'- gCUG-GG-CCU-UCUCCgCGCGC-UC-GAUG- -5'
24626 3' -59.3 NC_005264.1 + 133074 0.66 0.810987
Target:  5'- gCGAgCCGcGAGcGAGcuGUgGUGCGAGCUGCa -3'
miRNA:   3'- -GCUgGGC-CUU-CUC--CG-CGCGCUCGAUG- -5'
24626 3' -59.3 NC_005264.1 + 162413 0.66 0.810987
Target:  5'- aGACgCUaGGGcAGAGGgGCGCGaAGcCUACg -3'
miRNA:   3'- gCUG-GG-CCU-UCUCCgCGCGC-UC-GAUG- -5'
24626 3' -59.3 NC_005264.1 + 3694 0.66 0.810987
Target:  5'- uGGCgCGGAAaGGGCGCacaguacuugccGCGGGCggGCu -3'
miRNA:   3'- gCUGgGCCUUcUCCGCG------------CGCUCGa-UG- -5'
24626 3' -59.3 NC_005264.1 + 140688 0.66 0.801527
Target:  5'- aCGGCCCGcGgcGcaaucuaAGGCGCGCGuccGCUc- -3'
miRNA:   3'- -GCUGGGC-CuuC-------UCCGCGCGCu--CGAug -5'
24626 3' -59.3 NC_005264.1 + 127786 0.66 0.793656
Target:  5'- -cGCCUcucugGGGAGAGGCGaacgGCGGGCgucgGCc -3'
miRNA:   3'- gcUGGG-----CCUUCUCCGCg---CGCUCGa---UG- -5'
24626 3' -59.3 NC_005264.1 + 61440 0.66 0.793656
Target:  5'- gCGGCCCGcuccucGGCGC-CGAGUUGCu -3'
miRNA:   3'- -GCUGGGCcuucu-CCGCGcGCUCGAUG- -5'
24626 3' -59.3 NC_005264.1 + 100492 0.66 0.793656
Target:  5'- gGGCCCuGGAGGGGU-UGCGGGCg-- -3'
miRNA:   3'- gCUGGGcCUUCUCCGcGCGCUCGaug -5'
24626 3' -59.3 NC_005264.1 + 8760 0.66 0.793656
Target:  5'- -cGCCUcucugGGGAGAGGCGaacgGCGGGCgucgGCc -3'
miRNA:   3'- gcUGGG-----CCUUCUCCGCg---CGCUCGa---UG- -5'
24626 3' -59.3 NC_005264.1 + 77010 0.66 0.78478
Target:  5'- aGACCCGGuacuGAGcGCGCGCuucuuGGUcACa -3'
miRNA:   3'- gCUGGGCCuu--CUC-CGCGCGc----UCGaUG- -5'
24626 3' -59.3 NC_005264.1 + 115343 0.66 0.78478
Target:  5'- gGGCuCUGGAgcucgAGGGGcCGUuaGAGCUACu -3'
miRNA:   3'- gCUG-GGCCU-----UCUCC-GCGcgCUCGAUG- -5'
24626 3' -59.3 NC_005264.1 + 132286 0.66 0.783885
Target:  5'- cCGACUCGGAGGAcgacgagGGUucGCGCcAGCgagGCg -3'
miRNA:   3'- -GCUGGGCCUUCU-------CCG--CGCGcUCGa--UG- -5'
24626 3' -59.3 NC_005264.1 + 13259 0.66 0.783885
Target:  5'- cCGACUCGGAGGAcgacgagGGUucGCGCcAGCgagGCg -3'
miRNA:   3'- -GCUGGGCCUUCU-------CCG--CGCGcUCGa--UG- -5'
24626 3' -59.3 NC_005264.1 + 101911 0.66 0.775774
Target:  5'- aCGAUagaCGGAAGcaaaauGGCGCGCGAaacugGCgGCg -3'
miRNA:   3'- -GCUGg--GCCUUCu-----CCGCGCGCU-----CGaUG- -5'
24626 3' -59.3 NC_005264.1 + 120109 0.66 0.775774
Target:  5'- gGugCCGcgcaGAAGugGGGCGCaGCGAGCa-- -3'
miRNA:   3'- gCugGGC----CUUC--UCCGCG-CGCUCGaug -5'
24626 3' -59.3 NC_005264.1 + 124328 0.66 0.775774
Target:  5'- uGACCCGuGggGcGGGCGacugGCGGGagUACg -3'
miRNA:   3'- gCUGGGC-CuuC-UCCGCg---CGCUCg-AUG- -5'
24626 3' -59.3 NC_005264.1 + 9924 0.66 0.775774
Target:  5'- gCGACUgCGGGcuuuGcGGCGCGCugaGAGCUAUa -3'
miRNA:   3'- -GCUGG-GCCUu---CuCCGCGCG---CUCGAUG- -5'
24626 3' -59.3 NC_005264.1 + 49601 0.66 0.775774
Target:  5'- gCGACCaGGAcgacgGGGGGCGCucgGUGGGgUACc -3'
miRNA:   3'- -GCUGGgCCU-----UCUCCGCG---CGCUCgAUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.