miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24626 5' -55.3 NC_005264.1 + 34077 0.66 0.944465
Target:  5'- aGGaAGCCCGC-AGUUUGccgcGGCGGGCa -3'
miRNA:   3'- aUCaUUGGGCGcUCAGACc---CUGCUCG- -5'
24626 5' -55.3 NC_005264.1 + 105574 0.66 0.944465
Target:  5'- gAGaccCCCGCGGG-CUaGGGcuCGAGCg -3'
miRNA:   3'- aUCauuGGGCGCUCaGA-CCCu-GCUCG- -5'
24626 5' -55.3 NC_005264.1 + 153104 0.66 0.944465
Target:  5'- aGGaAGCCCGC-AGUUUGccgcGGCGGGCa -3'
miRNA:   3'- aUCaUUGGGCGcUCAGACc---CUGCUCG- -5'
24626 5' -55.3 NC_005264.1 + 75718 0.66 0.944017
Target:  5'- cUGGUGcgcCCCGCGggcgccggaggccAGUCUGGGugcguuacccGCGAGg -3'
miRNA:   3'- -AUCAUu--GGGCGC-------------UCAGACCC----------UGCUCg -5'
24626 5' -55.3 NC_005264.1 + 85099 0.66 0.939878
Target:  5'- gUGGUGGCCgGCGAGUCccucGGcGcauuGCGAGa -3'
miRNA:   3'- -AUCAUUGGgCGCUCAGa---CC-C----UGCUCg -5'
24626 5' -55.3 NC_005264.1 + 124109 0.66 0.939878
Target:  5'- ---cAGCCCGUccggggagGGGUCcucuacgccugGGGGCGAGCu -3'
miRNA:   3'- aucaUUGGGCG--------CUCAGa----------CCCUGCUCG- -5'
24626 5' -55.3 NC_005264.1 + 5082 0.66 0.939878
Target:  5'- ---cAGCCCGUccggggagGGGUCcucuacgccugGGGGCGAGCu -3'
miRNA:   3'- aucaUUGGGCG--------CUCAGa----------CCCUGCUCG- -5'
24626 5' -55.3 NC_005264.1 + 123490 0.66 0.929991
Target:  5'- cGGUGGCCgCGCGGuugCUGGG-CGAuGUg -3'
miRNA:   3'- aUCAUUGG-GCGCUca-GACCCuGCU-CG- -5'
24626 5' -55.3 NC_005264.1 + 115181 0.66 0.929991
Target:  5'- ---gAACCCGCacGAGUCUGGaGGCucGUg -3'
miRNA:   3'- aucaUUGGGCG--CUCAGACC-CUGcuCG- -5'
24626 5' -55.3 NC_005264.1 + 126213 0.66 0.919147
Target:  5'- gGGUucCCCGuCGuuGUCUGGGACaacGCg -3'
miRNA:   3'- aUCAuuGGGC-GCu-CAGACCCUGcu-CG- -5'
24626 5' -55.3 NC_005264.1 + 7186 0.66 0.919147
Target:  5'- gGGUucCCCGuCGuuGUCUGGGACaacGCg -3'
miRNA:   3'- aUCAuuGGGC-GCu-CAGACCCUGcu-CG- -5'
24626 5' -55.3 NC_005264.1 + 33942 0.67 0.907349
Target:  5'- ---gAGCCCGCc-GUCgucGaGGACGAGCg -3'
miRNA:   3'- aucaUUGGGCGcuCAGa--C-CCUGCUCG- -5'
24626 5' -55.3 NC_005264.1 + 150981 0.67 0.887893
Target:  5'- ---gAGCUCGCGAGUggcGGcGACGGGCc -3'
miRNA:   3'- aucaUUGGGCGCUCAga-CC-CUGCUCG- -5'
24626 5' -55.3 NC_005264.1 + 18056 0.67 0.887893
Target:  5'- cGGcGGCgCCGCGAGcCaGGGcgcGCGGGCa -3'
miRNA:   3'- aUCaUUG-GGCGCUCaGaCCC---UGCUCG- -5'
24626 5' -55.3 NC_005264.1 + 31954 0.67 0.887893
Target:  5'- ---gAGCUCGCGAGUggcGGcGACGGGCc -3'
miRNA:   3'- aucaUUGGGCGCUCAga-CC-CUGCUCG- -5'
24626 5' -55.3 NC_005264.1 + 47007 0.67 0.880951
Target:  5'- -cGUcGCauagCGCGgucAGUcCUGGGGCGAGCg -3'
miRNA:   3'- auCAuUGg---GCGC---UCA-GACCCUGCUCG- -5'
24626 5' -55.3 NC_005264.1 + 120408 0.67 0.880245
Target:  5'- gAGUGccgcagcGCCgaaCGCGAaauuUUUGGGACGAGCu -3'
miRNA:   3'- aUCAU-------UGG---GCGCUc---AGACCCUGCUCG- -5'
24626 5' -55.3 NC_005264.1 + 81392 0.68 0.866408
Target:  5'- cGGUGACCUGCaauGGUCUgcGGGugGAa- -3'
miRNA:   3'- aUCAUUGGGCGc--UCAGA--CCCugCUcg -5'
24626 5' -55.3 NC_005264.1 + 116415 0.68 0.843027
Target:  5'- ---gAGCCCGCGgcaGGUCgcugGGGGCGucuGGCc -3'
miRNA:   3'- aucaUUGGGCGC---UCAGa---CCCUGC---UCG- -5'
24626 5' -55.3 NC_005264.1 + 9066 0.69 0.817921
Target:  5'- ---gGACCCGaCGcG-CUGaGGACGAGCg -3'
miRNA:   3'- aucaUUGGGC-GCuCaGAC-CCUGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.