miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24627 3' -58.3 NC_005264.1 + 93244 0.66 0.833027
Target:  5'- cCGGGCG-GCGCCCucgucGGCGCguuCGCGCa-- -3'
miRNA:   3'- -GUUCGCuCGUGGG-----CCGCG---GUGUGaug -5'
24627 3' -58.3 NC_005264.1 + 86434 0.66 0.833027
Target:  5'- --cGcCGGGCGCCCuauGUGCCACGCc-- -3'
miRNA:   3'- guuC-GCUCGUGGGc--CGCGGUGUGaug -5'
24627 3' -58.3 NC_005264.1 + 84352 0.66 0.833027
Target:  5'- --cGCGuGCA-CCGGCGCgUAUGCUAUa -3'
miRNA:   3'- guuCGCuCGUgGGCCGCG-GUGUGAUG- -5'
24627 3' -58.3 NC_005264.1 + 133081 0.66 0.833027
Target:  5'- gCGAGCGAGCugU-GGUGCga-GCUGCa -3'
miRNA:   3'- -GUUCGCUCGugGgCCGCGgugUGAUG- -5'
24627 3' -58.3 NC_005264.1 + 55049 0.66 0.830551
Target:  5'- aGAGCGAGggucucgaggagcuCAUCCGGgGCCuauacgauacgcACACUAUu -3'
miRNA:   3'- gUUCGCUC--------------GUGGGCCgCGG------------UGUGAUG- -5'
24627 3' -58.3 NC_005264.1 + 67941 0.66 0.828059
Target:  5'- -uAGCGGGguuCCCGGCGCCugcggcucgagaaagGCuucuGCUGCg -3'
miRNA:   3'- guUCGCUCgu-GGGCCGCGG---------------UG----UGAUG- -5'
24627 3' -58.3 NC_005264.1 + 96292 0.66 0.824712
Target:  5'- --cGCGcucguGCGCCuCGGCGuCCGCGUUGCu -3'
miRNA:   3'- guuCGCu----CGUGG-GCCGC-GGUGUGAUG- -5'
24627 3' -58.3 NC_005264.1 + 138419 0.66 0.824712
Target:  5'- -cGGCGAGaacguGCUuuGCGUCGCGCUGCu -3'
miRNA:   3'- guUCGCUCg----UGGgcCGCGGUGUGAUG- -5'
24627 3' -58.3 NC_005264.1 + 87063 0.66 0.824712
Target:  5'- gAGGCGAGCGCgaaCGaGaaccaGCCACACaGCc -3'
miRNA:   3'- gUUCGCUCGUGg--GC-Cg----CGGUGUGaUG- -5'
24627 3' -58.3 NC_005264.1 + 102998 0.66 0.816226
Target:  5'- gCGAGUgcguggucauGAGCucGCuuGGUGCgGCGCUACc -3'
miRNA:   3'- -GUUCG----------CUCG--UGggCCGCGgUGUGAUG- -5'
24627 3' -58.3 NC_005264.1 + 42756 0.66 0.816226
Target:  5'- -cGGUGGGCACgacucccgcuagCCGGCguccGCCAC-CUACu -3'
miRNA:   3'- guUCGCUCGUG------------GGCCG----CGGUGuGAUG- -5'
24627 3' -58.3 NC_005264.1 + 106240 0.66 0.816226
Target:  5'- uCGAGCGGuCGCgaGGCGCuCGCGcCUGCu -3'
miRNA:   3'- -GUUCGCUcGUGggCCGCG-GUGU-GAUG- -5'
24627 3' -58.3 NC_005264.1 + 138174 0.66 0.816226
Target:  5'- -uGGCG-GCuuCCGGCcuGCCuCGCUGCa -3'
miRNA:   3'- guUCGCuCGugGGCCG--CGGuGUGAUG- -5'
24627 3' -58.3 NC_005264.1 + 128575 0.66 0.816226
Target:  5'- gGAGCGcAGCACgCGGauuacCGCgCGCACgagGCg -3'
miRNA:   3'- gUUCGC-UCGUGgGCC-----GCG-GUGUGa--UG- -5'
24627 3' -58.3 NC_005264.1 + 68091 0.66 0.807577
Target:  5'- -uAGUGGGCuuuuCUCGGCGcCCAUGCgagACa -3'
miRNA:   3'- guUCGCUCGu---GGGCCGC-GGUGUGa--UG- -5'
24627 3' -58.3 NC_005264.1 + 154580 0.66 0.807577
Target:  5'- gAGGCGGaCACCagGGCGCCGCug-GCc -3'
miRNA:   3'- gUUCGCUcGUGGg-CCGCGGUGugaUG- -5'
24627 3' -58.3 NC_005264.1 + 22727 0.66 0.806703
Target:  5'- gCAAGCGuGUgucugcuGCCCGGUGCUGgGCgaaGCg -3'
miRNA:   3'- -GUUCGCuCG-------UGGGCCGCGGUgUGa--UG- -5'
24627 3' -58.3 NC_005264.1 + 142851 0.66 0.802312
Target:  5'- gCGAGCGAGCGCggucgguuuguugcgUCGacucGCGCCGCGCc-- -3'
miRNA:   3'- -GUUCGCUCGUG---------------GGC----CGCGGUGUGaug -5'
24627 3' -58.3 NC_005264.1 + 82367 0.66 0.798771
Target:  5'- gCAGGCGcGUcgAUCCGGUGCCGgGCgcaggGCu -3'
miRNA:   3'- -GUUCGCuCG--UGGGCCGCGGUgUGa----UG- -5'
24627 3' -58.3 NC_005264.1 + 8354 0.66 0.798771
Target:  5'- gGGGCGAccgucgcugauGCuuaCCGGCGCCGgACgcgGCg -3'
miRNA:   3'- gUUCGCU-----------CGug-GGCCGCGGUgUGa--UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.