miRNA display CGI


Results 1 - 20 of 90 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24627 5' -56.3 NC_005264.1 + 44780 0.66 0.909377
Target:  5'- cCGCGGCgAUCGUUGCCGacGCcGCg-- -3'
miRNA:   3'- cGCGUCGgUAGCAGCGGU--CGaUGagu -5'
24627 5' -56.3 NC_005264.1 + 124680 0.66 0.909377
Target:  5'- aGCGCGGCgGUaGUCGCacgcauGCUGCg-- -3'
miRNA:   3'- -CGCGUCGgUAgCAGCGgu----CGAUGagu -5'
24627 5' -56.3 NC_005264.1 + 5653 0.66 0.909377
Target:  5'- aGCGCGGCgGUaGUCGCacgcauGCUGCg-- -3'
miRNA:   3'- -CGCGUCGgUAgCAGCGgu----CGAUGagu -5'
24627 5' -56.3 NC_005264.1 + 37130 0.66 0.909377
Target:  5'- -gGCGGCCGUC-UCGgCCucGCUGCUg- -3'
miRNA:   3'- cgCGUCGGUAGcAGC-GGu-CGAUGAgu -5'
24627 5' -56.3 NC_005264.1 + 156157 0.66 0.909377
Target:  5'- -gGCGGCCGUC-UCGgCCucGCUGCUg- -3'
miRNA:   3'- cgCGUCGGUAGcAGC-GGu-CGAUGAgu -5'
24627 5' -56.3 NC_005264.1 + 114754 0.66 0.90321
Target:  5'- aGCGCAGCgCGUUcUUGCCcuGCgccGCUCGg -3'
miRNA:   3'- -CGCGUCG-GUAGcAGCGGu-CGa--UGAGU- -5'
24627 5' -56.3 NC_005264.1 + 79571 0.66 0.90321
Target:  5'- uUGCGGCCGaaauugaaguUCGccgCGCCAGCgcaUCAg -3'
miRNA:   3'- cGCGUCGGU----------AGCa--GCGGUCGaugAGU- -5'
24627 5' -56.3 NC_005264.1 + 36756 0.66 0.896811
Target:  5'- gGCGcCGGCCGgcgcCGUCGCC-GCUuGCgcgCAg -3'
miRNA:   3'- -CGC-GUCGGUa---GCAGCGGuCGA-UGa--GU- -5'
24627 5' -56.3 NC_005264.1 + 155782 0.66 0.896811
Target:  5'- gGCGcCGGCCGgcgcCGUCGCC-GCUuGCgcgCAg -3'
miRNA:   3'- -CGC-GUCGGUa---GCAGCGGuCGA-UGa--GU- -5'
24627 5' -56.3 NC_005264.1 + 51655 0.66 0.883325
Target:  5'- gGUGCaugaaGGCCAauUCGagaGCCGGCaGCUCAg -3'
miRNA:   3'- -CGCG-----UCGGU--AGCag-CGGUCGaUGAGU- -5'
24627 5' -56.3 NC_005264.1 + 11648 0.66 0.883325
Target:  5'- aGCGCGGCagggcugcuGUCGUCGUCGcGCaAUUCGa -3'
miRNA:   3'- -CGCGUCGg--------UAGCAGCGGU-CGaUGAGU- -5'
24627 5' -56.3 NC_005264.1 + 155960 0.66 0.883325
Target:  5'- uGCGCGGCUcgCGgaCGCUcuGGCUGCcgUCGg -3'
miRNA:   3'- -CGCGUCGGuaGCa-GCGG--UCGAUG--AGU- -5'
24627 5' -56.3 NC_005264.1 + 61603 0.66 0.883325
Target:  5'- cGCGagcuggaAGcCCGUCGcCGCCGGCaUACUgGg -3'
miRNA:   3'- -CGCg------UC-GGUAGCaGCGGUCG-AUGAgU- -5'
24627 5' -56.3 NC_005264.1 + 4982 0.66 0.883325
Target:  5'- gGUGCccGCCAUCGUCGUC-GUU-CUCGu -3'
miRNA:   3'- -CGCGu-CGGUAGCAGCGGuCGAuGAGU- -5'
24627 5' -56.3 NC_005264.1 + 19645 0.66 0.883325
Target:  5'- aGCGUGGucgugacuucuuCCAUCGUCGUCGGgcACUCGc -3'
miRNA:   3'- -CGCGUC------------GGUAGCAGCGGUCgaUGAGU- -5'
24627 5' -56.3 NC_005264.1 + 128835 0.66 0.883325
Target:  5'- cGCGUcGUCAUCGUCuCCGGCgucuugcccGCUCu -3'
miRNA:   3'- -CGCGuCGGUAGCAGcGGUCGa--------UGAGu -5'
24627 5' -56.3 NC_005264.1 + 8423 0.66 0.882627
Target:  5'- cGCGCAuguGCCuUUGUCGCCaucgucuGGCggaGCUCu -3'
miRNA:   3'- -CGCGU---CGGuAGCAGCGG-------UCGa--UGAGu -5'
24627 5' -56.3 NC_005264.1 + 86510 0.66 0.881225
Target:  5'- cGCGCGGCCAacuuUCGUgCGUCgacguauaaAGCUagaagugaaucuuuGCUCAa -3'
miRNA:   3'- -CGCGUCGGU----AGCA-GCGG---------UCGA--------------UGAGU- -5'
24627 5' -56.3 NC_005264.1 + 6436 0.66 0.876247
Target:  5'- uCGCGGCgG-CGUCGCUGGCggagaACUCc -3'
miRNA:   3'- cGCGUCGgUaGCAGCGGUCGa----UGAGu -5'
24627 5' -56.3 NC_005264.1 + 54943 0.66 0.876247
Target:  5'- aGCGCAuacGCaCcgCGcCGCUAGCUGC-CAu -3'
miRNA:   3'- -CGCGU---CG-GuaGCaGCGGUCGAUGaGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.