Results 1 - 20 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24627 | 5' | -56.3 | NC_005264.1 | + | 44780 | 0.66 | 0.909377 |
Target: 5'- cCGCGGCgAUCGUUGCCGacGCcGCg-- -3' miRNA: 3'- cGCGUCGgUAGCAGCGGU--CGaUGagu -5' |
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24627 | 5' | -56.3 | NC_005264.1 | + | 6436 | 0.66 | 0.876247 |
Target: 5'- uCGCGGCgG-CGUCGCUGGCggagaACUCc -3' miRNA: 3'- cGCGUCGgUaGCAGCGGUCGa----UGAGu -5' |
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24627 | 5' | -56.3 | NC_005264.1 | + | 54943 | 0.66 | 0.876247 |
Target: 5'- aGCGCAuacGCaCcgCGcCGCUAGCUGC-CAu -3' miRNA: 3'- -CGCGU---CG-GuaGCaGCGGUCGAUGaGU- -5' |
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24627 | 5' | -56.3 | NC_005264.1 | + | 156157 | 0.66 | 0.909377 |
Target: 5'- -gGCGGCCGUC-UCGgCCucGCUGCUg- -3' miRNA: 3'- cgCGUCGGUAGcAGC-GGu-CGAUGAgu -5' |
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24627 | 5' | -56.3 | NC_005264.1 | + | 64300 | 0.66 | 0.876247 |
Target: 5'- uCGCGGCCcacagcgCGUUGCC-GCUGC-CAa -3' miRNA: 3'- cGCGUCGGua-----GCAGCGGuCGAUGaGU- -5' |
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24627 | 5' | -56.3 | NC_005264.1 | + | 125463 | 0.66 | 0.876247 |
Target: 5'- uCGCGGCgG-CGUCGCUGGCggagaACUCc -3' miRNA: 3'- cGCGUCGgUaGCAGCGGUCGa----UGAGu -5' |
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24627 | 5' | -56.3 | NC_005264.1 | + | 149535 | 0.66 | 0.876247 |
Target: 5'- cGCGCGGCCGUCcUC-CgGGgaGCUCc -3' miRNA: 3'- -CGCGUCGGUAGcAGcGgUCgaUGAGu -5' |
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24627 | 5' | -56.3 | NC_005264.1 | + | 8423 | 0.66 | 0.882627 |
Target: 5'- cGCGCAuguGCCuUUGUCGCCaucgucuGGCggaGCUCu -3' miRNA: 3'- -CGCGU---CGGuAGCAGCGG-------UCGa--UGAGu -5' |
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24627 | 5' | -56.3 | NC_005264.1 | + | 11648 | 0.66 | 0.883325 |
Target: 5'- aGCGCGGCagggcugcuGUCGUCGUCGcGCaAUUCGa -3' miRNA: 3'- -CGCGUCGg--------UAGCAGCGGU-CGaUGAGU- -5' |
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24627 | 5' | -56.3 | NC_005264.1 | + | 30508 | 0.66 | 0.876247 |
Target: 5'- cGCGCGGCCGUCcUC-CgGGgaGCUCc -3' miRNA: 3'- -CGCGUCGGUAGcAGcGgUCgaUGAGu -5' |
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24627 | 5' | -56.3 | NC_005264.1 | + | 86510 | 0.66 | 0.881225 |
Target: 5'- cGCGCGGCCAacuuUCGUgCGUCgacguauaaAGCUagaagugaaucuuuGCUCAa -3' miRNA: 3'- -CGCGUCGGU----AGCA-GCGG---------UCGA--------------UGAGU- -5' |
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24627 | 5' | -56.3 | NC_005264.1 | + | 4982 | 0.66 | 0.883325 |
Target: 5'- gGUGCccGCCAUCGUCGUC-GUU-CUCGu -3' miRNA: 3'- -CGCGu-CGGUAGCAGCGGuCGAuGAGU- -5' |
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24627 | 5' | -56.3 | NC_005264.1 | + | 37130 | 0.66 | 0.909377 |
Target: 5'- -gGCGGCCGUC-UCGgCCucGCUGCUg- -3' miRNA: 3'- cgCGUCGGUAGcAGC-GGu-CGAUGAgu -5' |
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24627 | 5' | -56.3 | NC_005264.1 | + | 5653 | 0.66 | 0.909377 |
Target: 5'- aGCGCGGCgGUaGUCGCacgcauGCUGCg-- -3' miRNA: 3'- -CGCGUCGgUAgCAGCGgu----CGAUGagu -5' |
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24627 | 5' | -56.3 | NC_005264.1 | + | 114754 | 0.66 | 0.90321 |
Target: 5'- aGCGCAGCgCGUUcUUGCCcuGCgccGCUCGg -3' miRNA: 3'- -CGCGUCG-GUAGcAGCGGu-CGa--UGAGU- -5' |
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24627 | 5' | -56.3 | NC_005264.1 | + | 36756 | 0.66 | 0.896811 |
Target: 5'- gGCGcCGGCCGgcgcCGUCGCC-GCUuGCgcgCAg -3' miRNA: 3'- -CGC-GUCGGUa---GCAGCGGuCGA-UGa--GU- -5' |
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24627 | 5' | -56.3 | NC_005264.1 | + | 61603 | 0.66 | 0.883325 |
Target: 5'- cGCGagcuggaAGcCCGUCGcCGCCGGCaUACUgGg -3' miRNA: 3'- -CGCg------UC-GGUAGCaGCGGUCG-AUGAgU- -5' |
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24627 | 5' | -56.3 | NC_005264.1 | + | 128835 | 0.66 | 0.883325 |
Target: 5'- cGCGUcGUCAUCGUCuCCGGCgucuugcccGCUCu -3' miRNA: 3'- -CGCGuCGGUAGCAGcGGUCGa--------UGAGu -5' |
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24627 | 5' | -56.3 | NC_005264.1 | + | 155960 | 0.66 | 0.883325 |
Target: 5'- uGCGCGGCUcgCGgaCGCUcuGGCUGCcgUCGg -3' miRNA: 3'- -CGCGUCGGuaGCa-GCGG--UCGAUG--AGU- -5' |
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24627 | 5' | -56.3 | NC_005264.1 | + | 19645 | 0.66 | 0.883325 |
Target: 5'- aGCGUGGucgugacuucuuCCAUCGUCGUCGGgcACUCGc -3' miRNA: 3'- -CGCGUC------------GGUAGCAGCGGUCgaUGAGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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