miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24627 5' -56.3 NC_005264.1 + 77927 1.1 0.002175
Target:  5'- cGCGCAGCCAUCGUCGCCAGCUACUCAc -3'
miRNA:   3'- -CGCGUCGGUAGCAGCGGUCGAUGAGU- -5'
24627 5' -56.3 NC_005264.1 + 20241 0.8 0.217845
Target:  5'- gGCGUGGCCAUCGUCgcgGCCGGC-AUUCAg -3'
miRNA:   3'- -CGCGUCGGUAGCAG---CGGUCGaUGAGU- -5'
24627 5' -56.3 NC_005264.1 + 12925 0.78 0.277071
Target:  5'- uGCGUGGCCAUCGUgGCCAuccuauauaacuGCUGCUUu -3'
miRNA:   3'- -CGCGUCGGUAGCAgCGGU------------CGAUGAGu -5'
24627 5' -56.3 NC_005264.1 + 17026 0.77 0.340765
Target:  5'- -gGCGGCgAUCGUCGCCAGCaGCg-- -3'
miRNA:   3'- cgCGUCGgUAGCAGCGGUCGaUGagu -5'
24627 5' -56.3 NC_005264.1 + 146829 0.76 0.380479
Target:  5'- gGCGCGGCgGUCGUCGCCugccaugaugcGGCUAaauCUCc -3'
miRNA:   3'- -CGCGUCGgUAGCAGCGG-----------UCGAU---GAGu -5'
24627 5' -56.3 NC_005264.1 + 5151 0.74 0.477996
Target:  5'- gGCGUcGCCGUCGUCGUCGGUgccggcCUCGu -3'
miRNA:   3'- -CGCGuCGGUAGCAGCGGUCGau----GAGU- -5'
24627 5' -56.3 NC_005264.1 + 124178 0.74 0.477996
Target:  5'- gGCGUcGCCGUCGUCGUCGGUgccggcCUCGu -3'
miRNA:   3'- -CGCGuCGGUAGCAGCGGUCGau----GAGU- -5'
24627 5' -56.3 NC_005264.1 + 74312 0.74 0.487474
Target:  5'- cGCGCGGCauggccaacgaGUCGUCGUCGGUgauCUCAg -3'
miRNA:   3'- -CGCGUCGg----------UAGCAGCGGUCGau-GAGU- -5'
24627 5' -56.3 NC_005264.1 + 132223 0.73 0.526223
Target:  5'- cGCGCGgauccgucgccGCCGcCGUCGCCGGgCUGCUUc -3'
miRNA:   3'- -CGCGU-----------CGGUaGCAGCGGUC-GAUGAGu -5'
24627 5' -56.3 NC_005264.1 + 13196 0.73 0.526223
Target:  5'- cGCGCGgauccgucgccGCCGcCGUCGCCGGgCUGCUUc -3'
miRNA:   3'- -CGCGU-----------CGGUaGCAGCGGUC-GAUGAGu -5'
24627 5' -56.3 NC_005264.1 + 125516 0.71 0.616868
Target:  5'- uGCGCGGCCAUCGaggGCCGGUaGC-CGg -3'
miRNA:   3'- -CGCGUCGGUAGCag-CGGUCGaUGaGU- -5'
24627 5' -56.3 NC_005264.1 + 6489 0.71 0.616868
Target:  5'- uGCGCGGCCAUCGaggGCCGGUaGC-CGg -3'
miRNA:   3'- -CGCGUCGGUAGCag-CGGUCGaUGaGU- -5'
24627 5' -56.3 NC_005264.1 + 51974 0.71 0.627091
Target:  5'- --uCGGCCAUCGUCGCUguAGCUAUUg- -3'
miRNA:   3'- cgcGUCGGUAGCAGCGG--UCGAUGAgu -5'
24627 5' -56.3 NC_005264.1 + 130880 0.71 0.66794
Target:  5'- aCGCGGcCCGUCGcCGCCAcucGCgaGCUCAg -3'
miRNA:   3'- cGCGUC-GGUAGCaGCGGU---CGa-UGAGU- -5'
24627 5' -56.3 NC_005264.1 + 11854 0.71 0.66794
Target:  5'- aCGCGGcCCGUCGcCGCCAcucGCgaGCUCAg -3'
miRNA:   3'- cGCGUC-GGUAGCaGCGGU---CGa-UGAGU- -5'
24627 5' -56.3 NC_005264.1 + 142387 0.7 0.6781
Target:  5'- uGCGC-GCCGcUGUcCGCCGGCUACg-- -3'
miRNA:   3'- -CGCGuCGGUaGCA-GCGGUCGAUGagu -5'
24627 5' -56.3 NC_005264.1 + 34212 0.7 0.6983
Target:  5'- aGCGCAGUUcgCGUCGCCuG-UACUUu -3'
miRNA:   3'- -CGCGUCGGuaGCAGCGGuCgAUGAGu -5'
24627 5' -56.3 NC_005264.1 + 8221 0.7 0.6983
Target:  5'- aCGCGGCCAUCGgccgaaGCCgcAGCaGCUCc -3'
miRNA:   3'- cGCGUCGGUAGCag----CGG--UCGaUGAGu -5'
24627 5' -56.3 NC_005264.1 + 16766 0.7 0.6983
Target:  5'- aGCGaGGUCccgAUCGUCGCCGGCgguCUCu -3'
miRNA:   3'- -CGCgUCGG---UAGCAGCGGUCGau-GAGu -5'
24627 5' -56.3 NC_005264.1 + 127248 0.7 0.6983
Target:  5'- aCGCGGCCAUCGgccgaaGCCgcAGCaGCUCc -3'
miRNA:   3'- cGCGUCGGUAGCag----CGG--UCGaUGAGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.