miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24627 5' -56.3 NC_005264.1 + 153239 0.7 0.6983
Target:  5'- aGCGCAGUUcgCGUCGCCuG-UACUUu -3'
miRNA:   3'- -CGCGUCGGuaGCAGCGGuCgAUGAGu -5'
24627 5' -56.3 NC_005264.1 + 107916 0.7 0.708321
Target:  5'- uCGCAGCCGU--UCGCCAGCaGCg-- -3'
miRNA:   3'- cGCGUCGGUAgcAGCGGUCGaUGagu -5'
24627 5' -56.3 NC_005264.1 + 82191 0.7 0.712312
Target:  5'- gGCgGCGGCCAUCGUauuagacgguagcggCGCCAGCa--UCGc -3'
miRNA:   3'- -CG-CGUCGGUAGCA---------------GCGGUCGaugAGU- -5'
24627 5' -56.3 NC_005264.1 + 60725 0.7 0.718278
Target:  5'- cCGCGGCC-UCGUaccgcCGCCAGCcgucCUCAg -3'
miRNA:   3'- cGCGUCGGuAGCA-----GCGGUCGau--GAGU- -5'
24627 5' -56.3 NC_005264.1 + 96076 0.7 0.718278
Target:  5'- cGCGCGGCCuguaucCGUUGC-GGCUACUg- -3'
miRNA:   3'- -CGCGUCGGua----GCAGCGgUCGAUGAgu -5'
24627 5' -56.3 NC_005264.1 + 136285 0.69 0.728161
Target:  5'- uGCGCGGCCGUCGUUaccgucCCAGCg---CAg -3'
miRNA:   3'- -CGCGUCGGUAGCAGc-----GGUCGaugaGU- -5'
24627 5' -56.3 NC_005264.1 + 35789 0.69 0.737961
Target:  5'- gGCGCGguggcGCCGUCGUgGCgGGCgcCUCu -3'
miRNA:   3'- -CGCGU-----CGGUAGCAgCGgUCGauGAGu -5'
24627 5' -56.3 NC_005264.1 + 88440 0.69 0.737961
Target:  5'- cCGCAGCCAgaaccuguUCGaCGCCcGCUACcCAg -3'
miRNA:   3'- cGCGUCGGU--------AGCaGCGGuCGAUGaGU- -5'
24627 5' -56.3 NC_005264.1 + 154815 0.69 0.737961
Target:  5'- gGCGCGguggcGCCGUCGUgGCgGGCgcCUCu -3'
miRNA:   3'- -CGCGU-----CGGUAGCAgCGgUCGauGAGu -5'
24627 5' -56.3 NC_005264.1 + 152447 0.69 0.738936
Target:  5'- cCGCucgacgaucccuccCCGUCGUCGCCcggacAGCUGCUCGc -3'
miRNA:   3'- cGCGuc------------GGUAGCAGCGG-----UCGAUGAGU- -5'
24627 5' -56.3 NC_005264.1 + 33420 0.69 0.738936
Target:  5'- cCGCucgacgaucccuccCCGUCGUCGCCcggacAGCUGCUCGc -3'
miRNA:   3'- cGCGuc------------GGUAGCAGCGG-----UCGAUGAGU- -5'
24627 5' -56.3 NC_005264.1 + 17683 0.69 0.74767
Target:  5'- gGCGCAGCCGagGcCGC-GGCgGCUCGu -3'
miRNA:   3'- -CGCGUCGGUagCaGCGgUCGaUGAGU- -5'
24627 5' -56.3 NC_005264.1 + 156174 0.69 0.757277
Target:  5'- uGCGCGGCUuugCGgcguggcggCGCCGGCUAUaugUCGg -3'
miRNA:   3'- -CGCGUCGGua-GCa--------GCGGUCGAUG---AGU- -5'
24627 5' -56.3 NC_005264.1 + 17334 0.69 0.757277
Target:  5'- uCGCAGgCAUCaUCGCC-GCUAuCUCAc -3'
miRNA:   3'- cGCGUCgGUAGcAGCGGuCGAU-GAGU- -5'
24627 5' -56.3 NC_005264.1 + 25408 0.69 0.757277
Target:  5'- uGCGCAGCUAucUCGUgCGCCAGgcgaUACg-- -3'
miRNA:   3'- -CGCGUCGGU--AGCA-GCGGUCg---AUGagu -5'
24627 5' -56.3 NC_005264.1 + 60414 0.69 0.757277
Target:  5'- -gGguGCCcgUGUUGCCGGUcgagGCUCAu -3'
miRNA:   3'- cgCguCGGuaGCAGCGGUCGa---UGAGU- -5'
24627 5' -56.3 NC_005264.1 + 75234 0.69 0.765829
Target:  5'- gGCGCGGCCAggUCGUCcgcguuuGCCGGCa----- -3'
miRNA:   3'- -CGCGUCGGU--AGCAG-------CGGUCGaugagu -5'
24627 5' -56.3 NC_005264.1 + 73539 0.69 0.766773
Target:  5'- aGUGCGGgCAUCacguGUCGCCcauCUGCUCAc -3'
miRNA:   3'- -CGCGUCgGUAG----CAGCGGuc-GAUGAGU- -5'
24627 5' -56.3 NC_005264.1 + 47553 0.69 0.766773
Target:  5'- uGCGCGGgaCGUCGUUGUCGcGCUACa-- -3'
miRNA:   3'- -CGCGUCg-GUAGCAGCGGU-CGAUGagu -5'
24627 5' -56.3 NC_005264.1 + 117194 0.69 0.77615
Target:  5'- gGCGCcuAGCCGccgCGUCGUCAGUUAUcuUCu -3'
miRNA:   3'- -CGCG--UCGGUa--GCAGCGGUCGAUG--AGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.