miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24627 5' -56.3 NC_005264.1 + 64300 0.66 0.876247
Target:  5'- uCGCGGCCcacagcgCGUUGCC-GCUGC-CAa -3'
miRNA:   3'- cGCGUCGGua-----GCAGCGGuCGAUGaGU- -5'
24627 5' -56.3 NC_005264.1 + 149535 0.66 0.876247
Target:  5'- cGCGCGGCCGUCcUC-CgGGgaGCUCc -3'
miRNA:   3'- -CGCGUCGGUAGcAGcGgUCgaUGAGu -5'
24627 5' -56.3 NC_005264.1 + 30508 0.66 0.876247
Target:  5'- cGCGCGGCCGUCcUC-CgGGgaGCUCc -3'
miRNA:   3'- -CGCGUCGGUAGcAGcGgUCgaUGAGu -5'
24627 5' -56.3 NC_005264.1 + 6436 0.66 0.876247
Target:  5'- uCGCGGCgG-CGUCGCUGGCggagaACUCc -3'
miRNA:   3'- cGCGUCGgUaGCAGCGGUCGa----UGAGu -5'
24627 5' -56.3 NC_005264.1 + 42068 0.67 0.86895
Target:  5'- cCGCGGCgCGUgG-CGUCAGCUGCg-- -3'
miRNA:   3'- cGCGUCG-GUAgCaGCGGUCGAUGagu -5'
24627 5' -56.3 NC_005264.1 + 37996 0.67 0.861442
Target:  5'- -gGCGGCCAcCGcCGCCGGaCUAUUgAa -3'
miRNA:   3'- cgCGUCGGUaGCaGCGGUC-GAUGAgU- -5'
24627 5' -56.3 NC_005264.1 + 157023 0.67 0.861442
Target:  5'- -gGCGGCCAcCGcCGCCGGaCUAUUgAa -3'
miRNA:   3'- cgCGUCGGUaGCaGCGGUC-GAUGAgU- -5'
24627 5' -56.3 NC_005264.1 + 155565 0.67 0.861442
Target:  5'- gGCGgGGCUcucCGUCGCCAagGCUACg-- -3'
miRNA:   3'- -CGCgUCGGua-GCAGCGGU--CGAUGagu -5'
24627 5' -56.3 NC_005264.1 + 22211 0.67 0.861442
Target:  5'- uGCGCGGCaaguggaGUCGUCGCCucgucGGCgguCUgGg -3'
miRNA:   3'- -CGCGUCGg------UAGCAGCGG-----UCGau-GAgU- -5'
24627 5' -56.3 NC_005264.1 + 100260 0.67 0.845811
Target:  5'- cGCGCGGUCAauuuuaUCGaucCGCgCAGCggGCUCGg -3'
miRNA:   3'- -CGCGUCGGU------AGCa--GCG-GUCGa-UGAGU- -5'
24627 5' -56.3 NC_005264.1 + 36301 0.67 0.845811
Target:  5'- aGgGCGGaCGUCGUCGCUAucGCUGC-CGu -3'
miRNA:   3'- -CgCGUCgGUAGCAGCGGU--CGAUGaGU- -5'
24627 5' -56.3 NC_005264.1 + 155328 0.67 0.845811
Target:  5'- aGgGCGGaCGUCGUCGCUAucGCUGC-CGu -3'
miRNA:   3'- -CgCGUCgGUAGCAGCGGU--CGAUGaGU- -5'
24627 5' -56.3 NC_005264.1 + 61439 0.67 0.845811
Target:  5'- -gGCGGCCcgcuccUCGgCGCCgAGUUGCUCGa -3'
miRNA:   3'- cgCGUCGGu-----AGCaGCGG-UCGAUGAGU- -5'
24627 5' -56.3 NC_005264.1 + 36004 0.67 0.837701
Target:  5'- cGCGCAGCgAcgaggCGUUGCCcGCcaaUACUCu -3'
miRNA:   3'- -CGCGUCGgUa----GCAGCGGuCG---AUGAGu -5'
24627 5' -56.3 NC_005264.1 + 2849 0.67 0.837701
Target:  5'- cGCGCucgcGCCGUCGccCGCUgcGGCUGCg-- -3'
miRNA:   3'- -CGCGu---CGGUAGCa-GCGG--UCGAUGagu -5'
24627 5' -56.3 NC_005264.1 + 145163 0.67 0.837701
Target:  5'- cCGCGGCC-UCGgcugCGCCugaGGCUACg-- -3'
miRNA:   3'- cGCGUCGGuAGCa---GCGG---UCGAUGagu -5'
24627 5' -56.3 NC_005264.1 + 130054 0.67 0.837701
Target:  5'- uUGCGGCCAgacCGUCGCUgccguGGCgaugAUUCAu -3'
miRNA:   3'- cGCGUCGGUa--GCAGCGG-----UCGa---UGAGU- -5'
24627 5' -56.3 NC_005264.1 + 121875 0.67 0.837701
Target:  5'- cGCGCucgcGCCGUCGccCGCUgcGGCUGCg-- -3'
miRNA:   3'- -CGCGu---CGGUAGCa-GCGG--UCGAUGagu -5'
24627 5' -56.3 NC_005264.1 + 119651 0.68 0.829405
Target:  5'- cGC-CGGCCcgCGUCGCaggCAGCgcgauagagGCUCAc -3'
miRNA:   3'- -CGcGUCGGuaGCAGCG---GUCGa--------UGAGU- -5'
24627 5' -56.3 NC_005264.1 + 624 0.68 0.829405
Target:  5'- cGC-CGGCCcgCGUCGCaggCAGCgcgauagagGCUCAc -3'
miRNA:   3'- -CGcGUCGGuaGCAGCG---GUCGa--------UGAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.