miRNA display CGI


Results 41 - 60 of 90 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24627 5' -56.3 NC_005264.1 + 58137 0.68 0.82093
Target:  5'- cGCGCAGCCGUCuGgugcucCGUCAcGUUAUUCu -3'
miRNA:   3'- -CGCGUCGGUAG-Ca-----GCGGU-CGAUGAGu -5'
24627 5' -56.3 NC_005264.1 + 35901 0.68 0.812284
Target:  5'- cGUGguGUCGggGUCGCUGGCU-CUCGc -3'
miRNA:   3'- -CGCguCGGUagCAGCGGUCGAuGAGU- -5'
24627 5' -56.3 NC_005264.1 + 78085 0.68 0.812284
Target:  5'- cGCGCuGcCCGUCGUUGC-GGCacgugACUCAg -3'
miRNA:   3'- -CGCGuC-GGUAGCAGCGgUCGa----UGAGU- -5'
24627 5' -56.3 NC_005264.1 + 132486 0.68 0.81141
Target:  5'- -gGCAGCCA-CGUgGCCgcagggcAGCUGCUg- -3'
miRNA:   3'- cgCGUCGGUaGCAgCGG-------UCGAUGAgu -5'
24627 5' -56.3 NC_005264.1 + 51735 0.68 0.803474
Target:  5'- cCGgAGCCggCGUUGCCAGUaauuaaauaUACUCu -3'
miRNA:   3'- cGCgUCGGuaGCAGCGGUCG---------AUGAGu -5'
24627 5' -56.3 NC_005264.1 + 60533 0.68 0.803474
Target:  5'- gGCGCAGCCAUUG-CGCUcuGGC-ACg-- -3'
miRNA:   3'- -CGCGUCGGUAGCaGCGG--UCGaUGagu -5'
24627 5' -56.3 NC_005264.1 + 63847 0.68 0.79451
Target:  5'- gGCGCGGUCGUU-UCGUCAGgCcGCUCAc -3'
miRNA:   3'- -CGCGUCGGUAGcAGCGGUC-GaUGAGU- -5'
24627 5' -56.3 NC_005264.1 + 33485 0.68 0.79451
Target:  5'- cGCGCacucguguauuGGCUAuUCGUUGCgCGGCUACUa- -3'
miRNA:   3'- -CGCG-----------UCGGU-AGCAGCG-GUCGAUGAgu -5'
24627 5' -56.3 NC_005264.1 + 90767 0.68 0.79451
Target:  5'- cGCGacCAGCaCGUCGUCgGCCAGCuUGC-CGc -3'
miRNA:   3'- -CGC--GUCG-GUAGCAG-CGGUCG-AUGaGU- -5'
24627 5' -56.3 NC_005264.1 + 87763 0.68 0.785399
Target:  5'- aGCGCAcacccuGCCucucCG-CGUCAGCUACUCc -3'
miRNA:   3'- -CGCGU------CGGua--GCaGCGGUCGAUGAGu -5'
24627 5' -56.3 NC_005264.1 + 117194 0.69 0.77615
Target:  5'- gGCGCcuAGCCGccgCGUCGUCAGUUAUcuUCu -3'
miRNA:   3'- -CGCG--UCGGUa--GCAGCGGUCGAUG--AGu -5'
24627 5' -56.3 NC_005264.1 + 73539 0.69 0.766773
Target:  5'- aGUGCGGgCAUCacguGUCGCCcauCUGCUCAc -3'
miRNA:   3'- -CGCGUCgGUAG----CAGCGGuc-GAUGAGU- -5'
24627 5' -56.3 NC_005264.1 + 47553 0.69 0.766773
Target:  5'- uGCGCGGgaCGUCGUUGUCGcGCUACa-- -3'
miRNA:   3'- -CGCGUCg-GUAGCAGCGGU-CGAUGagu -5'
24627 5' -56.3 NC_005264.1 + 75234 0.69 0.765829
Target:  5'- gGCGCGGCCAggUCGUCcgcguuuGCCGGCa----- -3'
miRNA:   3'- -CGCGUCGGU--AGCAG-------CGGUCGaugagu -5'
24627 5' -56.3 NC_005264.1 + 156174 0.69 0.757277
Target:  5'- uGCGCGGCUuugCGgcguggcggCGCCGGCUAUaugUCGg -3'
miRNA:   3'- -CGCGUCGGua-GCa--------GCGGUCGAUG---AGU- -5'
24627 5' -56.3 NC_005264.1 + 60414 0.69 0.757277
Target:  5'- -gGguGCCcgUGUUGCCGGUcgagGCUCAu -3'
miRNA:   3'- cgCguCGGuaGCAGCGGUCGa---UGAGU- -5'
24627 5' -56.3 NC_005264.1 + 17334 0.69 0.757277
Target:  5'- uCGCAGgCAUCaUCGCC-GCUAuCUCAc -3'
miRNA:   3'- cGCGUCgGUAGcAGCGGuCGAU-GAGU- -5'
24627 5' -56.3 NC_005264.1 + 25408 0.69 0.757277
Target:  5'- uGCGCAGCUAucUCGUgCGCCAGgcgaUACg-- -3'
miRNA:   3'- -CGCGUCGGU--AGCA-GCGGUCg---AUGagu -5'
24627 5' -56.3 NC_005264.1 + 17683 0.69 0.74767
Target:  5'- gGCGCAGCCGagGcCGC-GGCgGCUCGu -3'
miRNA:   3'- -CGCGUCGGUagCaGCGgUCGaUGAGU- -5'
24627 5' -56.3 NC_005264.1 + 33420 0.69 0.738936
Target:  5'- cCGCucgacgaucccuccCCGUCGUCGCCcggacAGCUGCUCGc -3'
miRNA:   3'- cGCGuc------------GGUAGCAGCGG-----UCGAUGAGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.