miRNA display CGI


Results 1 - 20 of 90 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24627 5' -56.3 NC_005264.1 + 624 0.68 0.829405
Target:  5'- cGC-CGGCCcgCGUCGCaggCAGCgcgauagagGCUCAc -3'
miRNA:   3'- -CGcGUCGGuaGCAGCG---GUCGa--------UGAGU- -5'
24627 5' -56.3 NC_005264.1 + 2849 0.67 0.837701
Target:  5'- cGCGCucgcGCCGUCGccCGCUgcGGCUGCg-- -3'
miRNA:   3'- -CGCGu---CGGUAGCa-GCGG--UCGAUGagu -5'
24627 5' -56.3 NC_005264.1 + 4982 0.66 0.883325
Target:  5'- gGUGCccGCCAUCGUCGUC-GUU-CUCGu -3'
miRNA:   3'- -CGCGu-CGGUAGCAGCGGuCGAuGAGU- -5'
24627 5' -56.3 NC_005264.1 + 5151 0.74 0.477996
Target:  5'- gGCGUcGCCGUCGUCGUCGGUgccggcCUCGu -3'
miRNA:   3'- -CGCGuCGGUAGCAGCGGUCGau----GAGU- -5'
24627 5' -56.3 NC_005264.1 + 5653 0.66 0.909377
Target:  5'- aGCGCGGCgGUaGUCGCacgcauGCUGCg-- -3'
miRNA:   3'- -CGCGUCGgUAgCAGCGgu----CGAUGagu -5'
24627 5' -56.3 NC_005264.1 + 6436 0.66 0.876247
Target:  5'- uCGCGGCgG-CGUCGCUGGCggagaACUCc -3'
miRNA:   3'- cGCGUCGgUaGCAGCGGUCGa----UGAGu -5'
24627 5' -56.3 NC_005264.1 + 6489 0.71 0.616868
Target:  5'- uGCGCGGCCAUCGaggGCCGGUaGC-CGg -3'
miRNA:   3'- -CGCGUCGGUAGCag-CGGUCGaUGaGU- -5'
24627 5' -56.3 NC_005264.1 + 8221 0.7 0.6983
Target:  5'- aCGCGGCCAUCGgccgaaGCCgcAGCaGCUCc -3'
miRNA:   3'- cGCGUCGGUAGCag----CGG--UCGaUGAGu -5'
24627 5' -56.3 NC_005264.1 + 8423 0.66 0.882627
Target:  5'- cGCGCAuguGCCuUUGUCGCCaucgucuGGCggaGCUCu -3'
miRNA:   3'- -CGCGU---CGGuAGCAGCGG-------UCGa--UGAGu -5'
24627 5' -56.3 NC_005264.1 + 11648 0.66 0.883325
Target:  5'- aGCGCGGCagggcugcuGUCGUCGUCGcGCaAUUCGa -3'
miRNA:   3'- -CGCGUCGg--------UAGCAGCGGU-CGaUGAGU- -5'
24627 5' -56.3 NC_005264.1 + 11854 0.71 0.66794
Target:  5'- aCGCGGcCCGUCGcCGCCAcucGCgaGCUCAg -3'
miRNA:   3'- cGCGUC-GGUAGCaGCGGU---CGa-UGAGU- -5'
24627 5' -56.3 NC_005264.1 + 12925 0.78 0.277071
Target:  5'- uGCGUGGCCAUCGUgGCCAuccuauauaacuGCUGCUUu -3'
miRNA:   3'- -CGCGUCGGUAGCAgCGGU------------CGAUGAGu -5'
24627 5' -56.3 NC_005264.1 + 13196 0.73 0.526223
Target:  5'- cGCGCGgauccgucgccGCCGcCGUCGCCGGgCUGCUUc -3'
miRNA:   3'- -CGCGU-----------CGGUaGCAGCGGUC-GAUGAGu -5'
24627 5' -56.3 NC_005264.1 + 16766 0.7 0.6983
Target:  5'- aGCGaGGUCccgAUCGUCGCCGGCgguCUCu -3'
miRNA:   3'- -CGCgUCGG---UAGCAGCGGUCGau-GAGu -5'
24627 5' -56.3 NC_005264.1 + 17026 0.77 0.340765
Target:  5'- -gGCGGCgAUCGUCGCCAGCaGCg-- -3'
miRNA:   3'- cgCGUCGgUAGCAGCGGUCGaUGagu -5'
24627 5' -56.3 NC_005264.1 + 17334 0.69 0.757277
Target:  5'- uCGCAGgCAUCaUCGCC-GCUAuCUCAc -3'
miRNA:   3'- cGCGUCgGUAGcAGCGGuCGAU-GAGU- -5'
24627 5' -56.3 NC_005264.1 + 17683 0.69 0.74767
Target:  5'- gGCGCAGCCGagGcCGC-GGCgGCUCGu -3'
miRNA:   3'- -CGCGUCGGUagCaGCGgUCGaUGAGU- -5'
24627 5' -56.3 NC_005264.1 + 19645 0.66 0.883325
Target:  5'- aGCGUGGucgugacuucuuCCAUCGUCGUCGGgcACUCGc -3'
miRNA:   3'- -CGCGUC------------GGUAGCAGCGGUCgaUGAGU- -5'
24627 5' -56.3 NC_005264.1 + 20241 0.8 0.217845
Target:  5'- gGCGUGGCCAUCGUCgcgGCCGGC-AUUCAg -3'
miRNA:   3'- -CGCGUCGGUAGCAG---CGGUCGaUGAGU- -5'
24627 5' -56.3 NC_005264.1 + 22211 0.67 0.861442
Target:  5'- uGCGCGGCaaguggaGUCGUCGCCucgucGGCgguCUgGg -3'
miRNA:   3'- -CGCGUCGg------UAGCAGCGG-----UCGau-GAgU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.