miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24627 5' -56.3 NC_005264.1 + 25408 0.69 0.757277
Target:  5'- uGCGCAGCUAucUCGUgCGCCAGgcgaUACg-- -3'
miRNA:   3'- -CGCGUCGGU--AGCA-GCGGUCg---AUGagu -5'
24627 5' -56.3 NC_005264.1 + 30508 0.66 0.876247
Target:  5'- cGCGCGGCCGUCcUC-CgGGgaGCUCc -3'
miRNA:   3'- -CGCGUCGGUAGcAGcGgUCgaUGAGu -5'
24627 5' -56.3 NC_005264.1 + 33420 0.69 0.738936
Target:  5'- cCGCucgacgaucccuccCCGUCGUCGCCcggacAGCUGCUCGc -3'
miRNA:   3'- cGCGuc------------GGUAGCAGCGG-----UCGAUGAGU- -5'
24627 5' -56.3 NC_005264.1 + 33485 0.68 0.79451
Target:  5'- cGCGCacucguguauuGGCUAuUCGUUGCgCGGCUACUa- -3'
miRNA:   3'- -CGCG-----------UCGGU-AGCAGCG-GUCGAUGAgu -5'
24627 5' -56.3 NC_005264.1 + 34212 0.7 0.6983
Target:  5'- aGCGCAGUUcgCGUCGCCuG-UACUUu -3'
miRNA:   3'- -CGCGUCGGuaGCAGCGGuCgAUGAGu -5'
24627 5' -56.3 NC_005264.1 + 35789 0.69 0.737961
Target:  5'- gGCGCGguggcGCCGUCGUgGCgGGCgcCUCu -3'
miRNA:   3'- -CGCGU-----CGGUAGCAgCGgUCGauGAGu -5'
24627 5' -56.3 NC_005264.1 + 35901 0.68 0.812284
Target:  5'- cGUGguGUCGggGUCGCUGGCU-CUCGc -3'
miRNA:   3'- -CGCguCGGUagCAGCGGUCGAuGAGU- -5'
24627 5' -56.3 NC_005264.1 + 36004 0.67 0.837701
Target:  5'- cGCGCAGCgAcgaggCGUUGCCcGCcaaUACUCu -3'
miRNA:   3'- -CGCGUCGgUa----GCAGCGGuCG---AUGAGu -5'
24627 5' -56.3 NC_005264.1 + 36301 0.67 0.845811
Target:  5'- aGgGCGGaCGUCGUCGCUAucGCUGC-CGu -3'
miRNA:   3'- -CgCGUCgGUAGCAGCGGU--CGAUGaGU- -5'
24627 5' -56.3 NC_005264.1 + 36756 0.66 0.896811
Target:  5'- gGCGcCGGCCGgcgcCGUCGCC-GCUuGCgcgCAg -3'
miRNA:   3'- -CGC-GUCGGUa---GCAGCGGuCGA-UGa--GU- -5'
24627 5' -56.3 NC_005264.1 + 37130 0.66 0.909377
Target:  5'- -gGCGGCCGUC-UCGgCCucGCUGCUg- -3'
miRNA:   3'- cgCGUCGGUAGcAGC-GGu-CGAUGAgu -5'
24627 5' -56.3 NC_005264.1 + 37996 0.67 0.861442
Target:  5'- -gGCGGCCAcCGcCGCCGGaCUAUUgAa -3'
miRNA:   3'- cgCGUCGGUaGCaGCGGUC-GAUGAgU- -5'
24627 5' -56.3 NC_005264.1 + 42068 0.67 0.86895
Target:  5'- cCGCGGCgCGUgG-CGUCAGCUGCg-- -3'
miRNA:   3'- cGCGUCG-GUAgCaGCGGUCGAUGagu -5'
24627 5' -56.3 NC_005264.1 + 44780 0.66 0.909377
Target:  5'- cCGCGGCgAUCGUUGCCGacGCcGCg-- -3'
miRNA:   3'- cGCGUCGgUAGCAGCGGU--CGaUGagu -5'
24627 5' -56.3 NC_005264.1 + 47553 0.69 0.766773
Target:  5'- uGCGCGGgaCGUCGUUGUCGcGCUACa-- -3'
miRNA:   3'- -CGCGUCg-GUAGCAGCGGU-CGAUGagu -5'
24627 5' -56.3 NC_005264.1 + 51655 0.66 0.883325
Target:  5'- gGUGCaugaaGGCCAauUCGagaGCCGGCaGCUCAg -3'
miRNA:   3'- -CGCG-----UCGGU--AGCag-CGGUCGaUGAGU- -5'
24627 5' -56.3 NC_005264.1 + 51735 0.68 0.803474
Target:  5'- cCGgAGCCggCGUUGCCAGUaauuaaauaUACUCu -3'
miRNA:   3'- cGCgUCGGuaGCAGCGGUCG---------AUGAGu -5'
24627 5' -56.3 NC_005264.1 + 51974 0.71 0.627091
Target:  5'- --uCGGCCAUCGUCGCUguAGCUAUUg- -3'
miRNA:   3'- cgcGUCGGUAGCAGCGG--UCGAUGAgu -5'
24627 5' -56.3 NC_005264.1 + 54943 0.66 0.876247
Target:  5'- aGCGCAuacGCaCcgCGcCGCUAGCUGC-CAu -3'
miRNA:   3'- -CGCGU---CG-GuaGCaGCGGUCGAUGaGU- -5'
24627 5' -56.3 NC_005264.1 + 58137 0.68 0.82093
Target:  5'- cGCGCAGCCGUCuGgugcucCGUCAcGUUAUUCu -3'
miRNA:   3'- -CGCGUCGGUAG-Ca-----GCGGU-CGAUGAGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.