miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24627 5' -56.3 NC_005264.1 + 157023 0.67 0.861442
Target:  5'- -gGCGGCCAcCGcCGCCGGaCUAUUgAa -3'
miRNA:   3'- cgCGUCGGUaGCaGCGGUC-GAUGAgU- -5'
24627 5' -56.3 NC_005264.1 + 156174 0.69 0.757277
Target:  5'- uGCGCGGCUuugCGgcguggcggCGCCGGCUAUaugUCGg -3'
miRNA:   3'- -CGCGUCGGua-GCa--------GCGGUCGAUG---AGU- -5'
24627 5' -56.3 NC_005264.1 + 156157 0.66 0.909377
Target:  5'- -gGCGGCCGUC-UCGgCCucGCUGCUg- -3'
miRNA:   3'- cgCGUCGGUAGcAGC-GGu-CGAUGAgu -5'
24627 5' -56.3 NC_005264.1 + 155960 0.66 0.883325
Target:  5'- uGCGCGGCUcgCGgaCGCUcuGGCUGCcgUCGg -3'
miRNA:   3'- -CGCGUCGGuaGCa-GCGG--UCGAUG--AGU- -5'
24627 5' -56.3 NC_005264.1 + 155782 0.66 0.896811
Target:  5'- gGCGcCGGCCGgcgcCGUCGCC-GCUuGCgcgCAg -3'
miRNA:   3'- -CGC-GUCGGUa---GCAGCGGuCGA-UGa--GU- -5'
24627 5' -56.3 NC_005264.1 + 155565 0.67 0.861442
Target:  5'- gGCGgGGCUcucCGUCGCCAagGCUACg-- -3'
miRNA:   3'- -CGCgUCGGua-GCAGCGGU--CGAUGagu -5'
24627 5' -56.3 NC_005264.1 + 155328 0.67 0.845811
Target:  5'- aGgGCGGaCGUCGUCGCUAucGCUGC-CGu -3'
miRNA:   3'- -CgCGUCgGUAGCAGCGGU--CGAUGaGU- -5'
24627 5' -56.3 NC_005264.1 + 154815 0.69 0.737961
Target:  5'- gGCGCGguggcGCCGUCGUgGCgGGCgcCUCu -3'
miRNA:   3'- -CGCGU-----CGGUAGCAgCGgUCGauGAGu -5'
24627 5' -56.3 NC_005264.1 + 153239 0.7 0.6983
Target:  5'- aGCGCAGUUcgCGUCGCCuG-UACUUu -3'
miRNA:   3'- -CGCGUCGGuaGCAGCGGuCgAUGAGu -5'
24627 5' -56.3 NC_005264.1 + 152447 0.69 0.738936
Target:  5'- cCGCucgacgaucccuccCCGUCGUCGCCcggacAGCUGCUCGc -3'
miRNA:   3'- cGCGuc------------GGUAGCAGCGG-----UCGAUGAGU- -5'
24627 5' -56.3 NC_005264.1 + 149535 0.66 0.876247
Target:  5'- cGCGCGGCCGUCcUC-CgGGgaGCUCc -3'
miRNA:   3'- -CGCGUCGGUAGcAGcGgUCgaUGAGu -5'
24627 5' -56.3 NC_005264.1 + 146829 0.76 0.380479
Target:  5'- gGCGCGGCgGUCGUCGCCugccaugaugcGGCUAaauCUCc -3'
miRNA:   3'- -CGCGUCGgUAGCAGCGG-----------UCGAU---GAGu -5'
24627 5' -56.3 NC_005264.1 + 145163 0.67 0.837701
Target:  5'- cCGCGGCC-UCGgcugCGCCugaGGCUACg-- -3'
miRNA:   3'- cGCGUCGGuAGCa---GCGG---UCGAUGagu -5'
24627 5' -56.3 NC_005264.1 + 142387 0.7 0.6781
Target:  5'- uGCGC-GCCGcUGUcCGCCGGCUACg-- -3'
miRNA:   3'- -CGCGuCGGUaGCA-GCGGUCGAUGagu -5'
24627 5' -56.3 NC_005264.1 + 136285 0.69 0.728161
Target:  5'- uGCGCGGCCGUCGUUaccgucCCAGCg---CAg -3'
miRNA:   3'- -CGCGUCGGUAGCAGc-----GGUCGaugaGU- -5'
24627 5' -56.3 NC_005264.1 + 132486 0.68 0.81141
Target:  5'- -gGCAGCCA-CGUgGCCgcagggcAGCUGCUg- -3'
miRNA:   3'- cgCGUCGGUaGCAgCGG-------UCGAUGAgu -5'
24627 5' -56.3 NC_005264.1 + 132223 0.73 0.526223
Target:  5'- cGCGCGgauccgucgccGCCGcCGUCGCCGGgCUGCUUc -3'
miRNA:   3'- -CGCGU-----------CGGUaGCAGCGGUC-GAUGAGu -5'
24627 5' -56.3 NC_005264.1 + 130880 0.71 0.66794
Target:  5'- aCGCGGcCCGUCGcCGCCAcucGCgaGCUCAg -3'
miRNA:   3'- cGCGUC-GGUAGCaGCGGU---CGa-UGAGU- -5'
24627 5' -56.3 NC_005264.1 + 130054 0.67 0.837701
Target:  5'- uUGCGGCCAgacCGUCGCUgccguGGCgaugAUUCAu -3'
miRNA:   3'- cGCGUCGGUa--GCAGCGG-----UCGa---UGAGU- -5'
24627 5' -56.3 NC_005264.1 + 128835 0.66 0.883325
Target:  5'- cGCGUcGUCAUCGUCuCCGGCgucuugcccGCUCu -3'
miRNA:   3'- -CGCGuCGGUAGCAGcGGUCGa--------UGAGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.