miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24627 5' -56.3 NC_005264.1 + 77927 1.1 0.002175
Target:  5'- cGCGCAGCCAUCGUCGCCAGCUACUCAc -3'
miRNA:   3'- -CGCGUCGGUAGCAGCGGUCGAUGAGU- -5'
24627 5' -56.3 NC_005264.1 + 25408 0.69 0.757277
Target:  5'- uGCGCAGCUAucUCGUgCGCCAGgcgaUACg-- -3'
miRNA:   3'- -CGCGUCGGU--AGCA-GCGGUCg---AUGagu -5'
24627 5' -56.3 NC_005264.1 + 73539 0.69 0.766773
Target:  5'- aGUGCGGgCAUCacguGUCGCCcauCUGCUCAc -3'
miRNA:   3'- -CGCGUCgGUAG----CAGCGGuc-GAUGAGU- -5'
24627 5' -56.3 NC_005264.1 + 156157 0.66 0.909377
Target:  5'- -gGCGGCCGUC-UCGgCCucGCUGCUg- -3'
miRNA:   3'- cgCGUCGGUAGcAGC-GGu-CGAUGAgu -5'
24627 5' -56.3 NC_005264.1 + 132223 0.73 0.526223
Target:  5'- cGCGCGgauccgucgccGCCGcCGUCGCCGGgCUGCUUc -3'
miRNA:   3'- -CGCGU-----------CGGUaGCAGCGGUC-GAUGAGu -5'
24627 5' -56.3 NC_005264.1 + 125516 0.71 0.616868
Target:  5'- uGCGCGGCCAUCGaggGCCGGUaGC-CGg -3'
miRNA:   3'- -CGCGUCGGUAGCag-CGGUCGaUGaGU- -5'
24627 5' -56.3 NC_005264.1 + 127248 0.7 0.6983
Target:  5'- aCGCGGCCAUCGgccgaaGCCgcAGCaGCUCc -3'
miRNA:   3'- cGCGUCGGUAGCag----CGG--UCGaUGAGu -5'
24627 5' -56.3 NC_005264.1 + 153239 0.7 0.6983
Target:  5'- aGCGCAGUUcgCGUCGCCuG-UACUUu -3'
miRNA:   3'- -CGCGUCGGuaGCAGCGGuCgAUGAGu -5'
24627 5' -56.3 NC_005264.1 + 60725 0.7 0.718278
Target:  5'- cCGCGGCC-UCGUaccgcCGCCAGCcgucCUCAg -3'
miRNA:   3'- cGCGUCGGuAGCA-----GCGGUCGau--GAGU- -5'
24627 5' -56.3 NC_005264.1 + 17683 0.69 0.74767
Target:  5'- gGCGCAGCCGagGcCGC-GGCgGCUCGu -3'
miRNA:   3'- -CGCGUCGGUagCaGCGgUCGaUGAGU- -5'
24627 5' -56.3 NC_005264.1 + 88440 0.69 0.737961
Target:  5'- cCGCAGCCAgaaccuguUCGaCGCCcGCUACcCAg -3'
miRNA:   3'- cGCGUCGGU--------AGCaGCGGuCGAUGaGU- -5'
24627 5' -56.3 NC_005264.1 + 96076 0.7 0.718278
Target:  5'- cGCGCGGCCuguaucCGUUGC-GGCUACUg- -3'
miRNA:   3'- -CGCGUCGGua----GCAGCGgUCGAUGAgu -5'
24627 5' -56.3 NC_005264.1 + 12925 0.78 0.277071
Target:  5'- uGCGUGGCCAUCGUgGCCAuccuauauaacuGCUGCUUu -3'
miRNA:   3'- -CGCGUCGGUAGCAgCGGU------------CGAUGAGu -5'
24627 5' -56.3 NC_005264.1 + 154815 0.69 0.737961
Target:  5'- gGCGCGguggcGCCGUCGUgGCgGGCgcCUCu -3'
miRNA:   3'- -CGCGU-----CGGUAGCAgCGgUCGauGAGu -5'
24627 5' -56.3 NC_005264.1 + 17026 0.77 0.340765
Target:  5'- -gGCGGCgAUCGUCGCCAGCaGCg-- -3'
miRNA:   3'- cgCGUCGgUAGCAGCGGUCGaUGagu -5'
24627 5' -56.3 NC_005264.1 + 107916 0.7 0.708321
Target:  5'- uCGCAGCCGU--UCGCCAGCaGCg-- -3'
miRNA:   3'- cGCGUCGGUAgcAGCGGUCGaUGagu -5'
24627 5' -56.3 NC_005264.1 + 152447 0.69 0.738936
Target:  5'- cCGCucgacgaucccuccCCGUCGUCGCCcggacAGCUGCUCGc -3'
miRNA:   3'- cGCGuc------------GGUAGCAGCGG-----UCGAUGAGU- -5'
24627 5' -56.3 NC_005264.1 + 47553 0.69 0.766773
Target:  5'- uGCGCGGgaCGUCGUUGUCGcGCUACa-- -3'
miRNA:   3'- -CGCGUCg-GUAGCAGCGGU-CGAUGagu -5'
24627 5' -56.3 NC_005264.1 + 124178 0.74 0.477996
Target:  5'- gGCGUcGCCGUCGUCGUCGGUgccggcCUCGu -3'
miRNA:   3'- -CGCGuCGGUAGCAGCGGUCGau----GAGU- -5'
24627 5' -56.3 NC_005264.1 + 130880 0.71 0.66794
Target:  5'- aCGCGGcCCGUCGcCGCCAcucGCgaGCUCAg -3'
miRNA:   3'- cGCGUC-GGUAGCaGCGGU---CGa-UGAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.