miRNA display CGI


Results 21 - 40 of 90 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24627 5' -56.3 NC_005264.1 + 63847 0.68 0.79451
Target:  5'- gGCGCGGUCGUU-UCGUCAGgCcGCUCAc -3'
miRNA:   3'- -CGCGUCGGUAGcAGCGGUC-GaUGAGU- -5'
24627 5' -56.3 NC_005264.1 + 73539 0.69 0.766773
Target:  5'- aGUGCGGgCAUCacguGUCGCCcauCUGCUCAc -3'
miRNA:   3'- -CGCGUCgGUAG----CAGCGGuc-GAUGAGU- -5'
24627 5' -56.3 NC_005264.1 + 96076 0.7 0.718278
Target:  5'- cGCGCGGCCuguaucCGUUGC-GGCUACUg- -3'
miRNA:   3'- -CGCGUCGGua----GCAGCGgUCGAUGAgu -5'
24627 5' -56.3 NC_005264.1 + 124178 0.74 0.477996
Target:  5'- gGCGUcGCCGUCGUCGUCGGUgccggcCUCGu -3'
miRNA:   3'- -CGCGuCGGUAGCAGCGGUCGau----GAGU- -5'
24627 5' -56.3 NC_005264.1 + 54943 0.66 0.876247
Target:  5'- aGCGCAuacGCaCcgCGcCGCUAGCUGC-CAu -3'
miRNA:   3'- -CGCGU---CG-GuaGCaGCGGUCGAUGaGU- -5'
24627 5' -56.3 NC_005264.1 + 119651 0.68 0.829405
Target:  5'- cGC-CGGCCcgCGUCGCaggCAGCgcgauagagGCUCAc -3'
miRNA:   3'- -CGcGUCGGuaGCAGCG---GUCGa--------UGAGU- -5'
24627 5' -56.3 NC_005264.1 + 25408 0.69 0.757277
Target:  5'- uGCGCAGCUAucUCGUgCGCCAGgcgaUACg-- -3'
miRNA:   3'- -CGCGUCGGU--AGCA-GCGGUCg---AUGagu -5'
24627 5' -56.3 NC_005264.1 + 17026 0.77 0.340765
Target:  5'- -gGCGGCgAUCGUCGCCAGCaGCg-- -3'
miRNA:   3'- cgCGUCGgUAGCAGCGGUCGaUGagu -5'
24627 5' -56.3 NC_005264.1 + 58137 0.68 0.82093
Target:  5'- cGCGCAGCCGUCuGgugcucCGUCAcGUUAUUCu -3'
miRNA:   3'- -CGCGUCGGUAG-Ca-----GCGGU-CGAUGAGu -5'
24627 5' -56.3 NC_005264.1 + 12925 0.78 0.277071
Target:  5'- uGCGUGGCCAUCGUgGCCAuccuauauaacuGCUGCUUu -3'
miRNA:   3'- -CGCGUCGGUAGCAgCGGU------------CGAUGAGu -5'
24627 5' -56.3 NC_005264.1 + 47553 0.69 0.766773
Target:  5'- uGCGCGGgaCGUCGUUGUCGcGCUACa-- -3'
miRNA:   3'- -CGCGUCg-GUAGCAGCGGU-CGAUGagu -5'
24627 5' -56.3 NC_005264.1 + 33485 0.68 0.79451
Target:  5'- cGCGCacucguguauuGGCUAuUCGUUGCgCGGCUACUa- -3'
miRNA:   3'- -CGCG-----------UCGGU-AGCAGCG-GUCGAUGAgu -5'
24627 5' -56.3 NC_005264.1 + 154815 0.69 0.737961
Target:  5'- gGCGCGguggcGCCGUCGUgGCgGGCgcCUCu -3'
miRNA:   3'- -CGCGU-----CGGUAGCAgCGgUCGauGAGu -5'
24627 5' -56.3 NC_005264.1 + 60725 0.7 0.718278
Target:  5'- cCGCGGCC-UCGUaccgcCGCCAGCcgucCUCAg -3'
miRNA:   3'- cGCGUCGGuAGCA-----GCGGUCGau--GAGU- -5'
24627 5' -56.3 NC_005264.1 + 127248 0.7 0.6983
Target:  5'- aCGCGGCCAUCGgccgaaGCCgcAGCaGCUCc -3'
miRNA:   3'- cGCGUCGGUAGCag----CGG--UCGaUGAGu -5'
24627 5' -56.3 NC_005264.1 + 132223 0.73 0.526223
Target:  5'- cGCGCGgauccgucgccGCCGcCGUCGCCGGgCUGCUUc -3'
miRNA:   3'- -CGCGU-----------CGGUaGCAGCGGUC-GAUGAGu -5'
24627 5' -56.3 NC_005264.1 + 8423 0.66 0.882627
Target:  5'- cGCGCAuguGCCuUUGUCGCCaucgucuGGCggaGCUCu -3'
miRNA:   3'- -CGCGU---CGGuAGCAGCGG-------UCGa--UGAGu -5'
24627 5' -56.3 NC_005264.1 + 64300 0.66 0.876247
Target:  5'- uCGCGGCCcacagcgCGUUGCC-GCUGC-CAa -3'
miRNA:   3'- cGCGUCGGua-----GCAGCGGuCGAUGaGU- -5'
24627 5' -56.3 NC_005264.1 + 155328 0.67 0.845811
Target:  5'- aGgGCGGaCGUCGUCGCUAucGCUGC-CGu -3'
miRNA:   3'- -CgCGUCgGUAGCAGCGGU--CGAUGaGU- -5'
24627 5' -56.3 NC_005264.1 + 36004 0.67 0.837701
Target:  5'- cGCGCAGCgAcgaggCGUUGCCcGCcaaUACUCu -3'
miRNA:   3'- -CGCGUCGgUa----GCAGCGGuCG---AUGAGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.