miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24627 5' -56.3 NC_005264.1 + 130054 0.67 0.837701
Target:  5'- uUGCGGCCAgacCGUCGCUgccguGGCgaugAUUCAu -3'
miRNA:   3'- cGCGUCGGUa--GCAGCGG-----UCGa---UGAGU- -5'
24627 5' -56.3 NC_005264.1 + 6436 0.66 0.876247
Target:  5'- uCGCGGCgG-CGUCGCUGGCggagaACUCc -3'
miRNA:   3'- cGCGUCGgUaGCAGCGGUCGa----UGAGu -5'
24627 5' -56.3 NC_005264.1 + 155565 0.67 0.861442
Target:  5'- gGCGgGGCUcucCGUCGCCAagGCUACg-- -3'
miRNA:   3'- -CGCgUCGGua-GCAGCGGU--CGAUGagu -5'
24627 5' -56.3 NC_005264.1 + 22211 0.67 0.861442
Target:  5'- uGCGCGGCaaguggaGUCGUCGCCucgucGGCgguCUgGg -3'
miRNA:   3'- -CGCGUCGg------UAGCAGCGG-----UCGau-GAgU- -5'
24627 5' -56.3 NC_005264.1 + 37996 0.67 0.861442
Target:  5'- -gGCGGCCAcCGcCGCCGGaCUAUUgAa -3'
miRNA:   3'- cgCGUCGGUaGCaGCGGUC-GAUGAgU- -5'
24627 5' -56.3 NC_005264.1 + 100260 0.67 0.845811
Target:  5'- cGCGCGGUCAauuuuaUCGaucCGCgCAGCggGCUCGg -3'
miRNA:   3'- -CGCGUCGGU------AGCa--GCG-GUCGa-UGAGU- -5'
24627 5' -56.3 NC_005264.1 + 36301 0.67 0.845811
Target:  5'- aGgGCGGaCGUCGUCGCUAucGCUGC-CGu -3'
miRNA:   3'- -CgCGUCgGUAGCAGCGGU--CGAUGaGU- -5'
24627 5' -56.3 NC_005264.1 + 145163 0.67 0.837701
Target:  5'- cCGCGGCC-UCGgcugCGCCugaGGCUACg-- -3'
miRNA:   3'- cGCGUCGGuAGCa---GCGG---UCGAUGagu -5'
24627 5' -56.3 NC_005264.1 + 2849 0.67 0.837701
Target:  5'- cGCGCucgcGCCGUCGccCGCUgcGGCUGCg-- -3'
miRNA:   3'- -CGCGu---CGGUAGCa-GCGG--UCGAUGagu -5'
24627 5' -56.3 NC_005264.1 + 30508 0.66 0.876247
Target:  5'- cGCGCGGCCGUCcUC-CgGGgaGCUCc -3'
miRNA:   3'- -CGCGUCGGUAGcAGcGgUCgaUGAGu -5'
24627 5' -56.3 NC_005264.1 + 86510 0.66 0.881225
Target:  5'- cGCGCGGCCAacuuUCGUgCGUCgacguauaaAGCUagaagugaaucuuuGCUCAa -3'
miRNA:   3'- -CGCGUCGGU----AGCA-GCGG---------UCGA--------------UGAGU- -5'
24627 5' -56.3 NC_005264.1 + 4982 0.66 0.883325
Target:  5'- gGUGCccGCCAUCGUCGUC-GUU-CUCGu -3'
miRNA:   3'- -CGCGu-CGGUAGCAGCGGuCGAuGAGU- -5'
24627 5' -56.3 NC_005264.1 + 37130 0.66 0.909377
Target:  5'- -gGCGGCCGUC-UCGgCCucGCUGCUg- -3'
miRNA:   3'- cgCGUCGGUAGcAGC-GGu-CGAUGAgu -5'
24627 5' -56.3 NC_005264.1 + 5653 0.66 0.909377
Target:  5'- aGCGCGGCgGUaGUCGCacgcauGCUGCg-- -3'
miRNA:   3'- -CGCGUCGgUAgCAGCGgu----CGAUGagu -5'
24627 5' -56.3 NC_005264.1 + 114754 0.66 0.90321
Target:  5'- aGCGCAGCgCGUUcUUGCCcuGCgccGCUCGg -3'
miRNA:   3'- -CGCGUCG-GUAGcAGCGGu-CGa--UGAGU- -5'
24627 5' -56.3 NC_005264.1 + 36756 0.66 0.896811
Target:  5'- gGCGcCGGCCGgcgcCGUCGCC-GCUuGCgcgCAg -3'
miRNA:   3'- -CGC-GUCGGUa---GCAGCGGuCGA-UGa--GU- -5'
24627 5' -56.3 NC_005264.1 + 61603 0.66 0.883325
Target:  5'- cGCGagcuggaAGcCCGUCGcCGCCGGCaUACUgGg -3'
miRNA:   3'- -CGCg------UC-GGUAGCaGCGGUCG-AUGAgU- -5'
24627 5' -56.3 NC_005264.1 + 128835 0.66 0.883325
Target:  5'- cGCGUcGUCAUCGUCuCCGGCgucuugcccGCUCu -3'
miRNA:   3'- -CGCGuCGGUAGCAGcGGUCGa--------UGAGu -5'
24627 5' -56.3 NC_005264.1 + 155960 0.66 0.883325
Target:  5'- uGCGCGGCUcgCGgaCGCUcuGGCUGCcgUCGg -3'
miRNA:   3'- -CGCGUCGGuaGCa-GCGG--UCGAUG--AGU- -5'
24627 5' -56.3 NC_005264.1 + 19645 0.66 0.883325
Target:  5'- aGCGUGGucgugacuucuuCCAUCGUCGUCGGgcACUCGc -3'
miRNA:   3'- -CGCGUC------------GGUAGCAGCGGUCgaUGAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.