miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24628 3' -49.5 NC_005264.1 + 94260 0.66 0.998378
Target:  5'- uGGCAa---GGUGCcaguUCUGGCCGCAc -3'
miRNA:   3'- -CUGUuaagCUAUGacu-AGACCGGCGU- -5'
24628 3' -49.5 NC_005264.1 + 15147 0.66 0.998049
Target:  5'- gGGCAAUcgcguugcggCGAUGCUGAUCUacauacacGGCaUGCAa -3'
miRNA:   3'- -CUGUUAa---------GCUAUGACUAGA--------CCG-GCGU- -5'
24628 3' -49.5 NC_005264.1 + 132378 0.66 0.998049
Target:  5'- aGCGAgacUUCuGUACUGGUgaacgUGGCCGCAg -3'
miRNA:   3'- cUGUU---AAGcUAUGACUAg----ACCGGCGU- -5'
24628 3' -49.5 NC_005264.1 + 24161 0.66 0.997665
Target:  5'- uGGCGAgUCGAgGCUGcugcGGCCGCGg -3'
miRNA:   3'- -CUGUUaAGCUaUGACuagaCCGGCGU- -5'
24628 3' -49.5 NC_005264.1 + 53260 0.67 0.996118
Target:  5'- aGACAAgaCGuuuucGCUaGAUcCUGGCCGCGc -3'
miRNA:   3'- -CUGUUaaGCua---UGA-CUA-GACCGGCGU- -5'
24628 3' -49.5 NC_005264.1 + 91871 0.67 0.995445
Target:  5'- cGACAAUggUCGAgguaGCgGGguggUUGGCCGCGg -3'
miRNA:   3'- -CUGUUA--AGCUa---UGaCUa---GACCGGCGU- -5'
24628 3' -49.5 NC_005264.1 + 112329 0.67 0.99468
Target:  5'- aGACA--UCGAccaagGCaGAaCUGGCCGCGg -3'
miRNA:   3'- -CUGUuaAGCUa----UGaCUaGACCGGCGU- -5'
24628 3' -49.5 NC_005264.1 + 17875 0.67 0.99468
Target:  5'- aGCAA-UCGGcggGCUGAUCUacGGCgCGCAc -3'
miRNA:   3'- cUGUUaAGCUa--UGACUAGA--CCG-GCGU- -5'
24628 3' -49.5 NC_005264.1 + 147772 0.67 0.993814
Target:  5'- cGACAua--GGUGC-GAUC-GGCCGCAu -3'
miRNA:   3'- -CUGUuaagCUAUGaCUAGaCCGGCGU- -5'
24628 3' -49.5 NC_005264.1 + 72079 0.67 0.992839
Target:  5'- cGACGA--CG-UGCUGGUCgcggucguaaUGGCCGCGu -3'
miRNA:   3'- -CUGUUaaGCuAUGACUAG----------ACCGGCGU- -5'
24628 3' -49.5 NC_005264.1 + 116422 0.68 0.989161
Target:  5'- cGGCAggUC---GCUGGgggcgUCUGGCCGCGg -3'
miRNA:   3'- -CUGUuaAGcuaUGACU-----AGACCGGCGU- -5'
24628 3' -49.5 NC_005264.1 + 32788 0.68 0.985988
Target:  5'- cGGCAg--CGAc---GGUCUGGCCGCAa -3'
miRNA:   3'- -CUGUuaaGCUaugaCUAGACCGGCGU- -5'
24628 3' -49.5 NC_005264.1 + 79531 1.09 0.011279
Target:  5'- cGACAAUUCGAUACUGAUCUGGCCGCAc -3'
miRNA:   3'- -CUGUUAAGCUAUGACUAGACCGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.