Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24628 | 3' | -49.5 | NC_005264.1 | + | 15147 | 0.66 | 0.998049 |
Target: 5'- gGGCAAUcgcguugcggCGAUGCUGAUCUacauacacGGCaUGCAa -3' miRNA: 3'- -CUGUUAa---------GCUAUGACUAGA--------CCG-GCGU- -5' |
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24628 | 3' | -49.5 | NC_005264.1 | + | 17875 | 0.67 | 0.99468 |
Target: 5'- aGCAA-UCGGcggGCUGAUCUacGGCgCGCAc -3' miRNA: 3'- cUGUUaAGCUa--UGACUAGA--CCG-GCGU- -5' |
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24628 | 3' | -49.5 | NC_005264.1 | + | 24161 | 0.66 | 0.997665 |
Target: 5'- uGGCGAgUCGAgGCUGcugcGGCCGCGg -3' miRNA: 3'- -CUGUUaAGCUaUGACuagaCCGGCGU- -5' |
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24628 | 3' | -49.5 | NC_005264.1 | + | 32788 | 0.68 | 0.985988 |
Target: 5'- cGGCAg--CGAc---GGUCUGGCCGCAa -3' miRNA: 3'- -CUGUuaaGCUaugaCUAGACCGGCGU- -5' |
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24628 | 3' | -49.5 | NC_005264.1 | + | 53260 | 0.67 | 0.996118 |
Target: 5'- aGACAAgaCGuuuucGCUaGAUcCUGGCCGCGc -3' miRNA: 3'- -CUGUUaaGCua---UGA-CUA-GACCGGCGU- -5' |
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24628 | 3' | -49.5 | NC_005264.1 | + | 72079 | 0.67 | 0.992839 |
Target: 5'- cGACGA--CG-UGCUGGUCgcggucguaaUGGCCGCGu -3' miRNA: 3'- -CUGUUaaGCuAUGACUAG----------ACCGGCGU- -5' |
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24628 | 3' | -49.5 | NC_005264.1 | + | 79531 | 1.09 | 0.011279 |
Target: 5'- cGACAAUUCGAUACUGAUCUGGCCGCAc -3' miRNA: 3'- -CUGUUAAGCUAUGACUAGACCGGCGU- -5' |
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24628 | 3' | -49.5 | NC_005264.1 | + | 91871 | 0.67 | 0.995445 |
Target: 5'- cGACAAUggUCGAgguaGCgGGguggUUGGCCGCGg -3' miRNA: 3'- -CUGUUA--AGCUa---UGaCUa---GACCGGCGU- -5' |
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24628 | 3' | -49.5 | NC_005264.1 | + | 94260 | 0.66 | 0.998378 |
Target: 5'- uGGCAa---GGUGCcaguUCUGGCCGCAc -3' miRNA: 3'- -CUGUuaagCUAUGacu-AGACCGGCGU- -5' |
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24628 | 3' | -49.5 | NC_005264.1 | + | 112329 | 0.67 | 0.99468 |
Target: 5'- aGACA--UCGAccaagGCaGAaCUGGCCGCGg -3' miRNA: 3'- -CUGUuaAGCUa----UGaCUaGACCGGCGU- -5' |
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24628 | 3' | -49.5 | NC_005264.1 | + | 116422 | 0.68 | 0.989161 |
Target: 5'- cGGCAggUC---GCUGGgggcgUCUGGCCGCGg -3' miRNA: 3'- -CUGUuaAGcuaUGACU-----AGACCGGCGU- -5' |
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24628 | 3' | -49.5 | NC_005264.1 | + | 132378 | 0.66 | 0.998049 |
Target: 5'- aGCGAgacUUCuGUACUGGUgaacgUGGCCGCAg -3' miRNA: 3'- cUGUU---AAGcUAUGACUAg----ACCGGCGU- -5' |
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24628 | 3' | -49.5 | NC_005264.1 | + | 147772 | 0.67 | 0.993814 |
Target: 5'- cGACAua--GGUGC-GAUC-GGCCGCAu -3' miRNA: 3'- -CUGUuaagCUAUGaCUAGaCCGGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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