miRNA display CGI


Results 21 - 40 of 60 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24629 3' -61.1 NC_005264.1 + 116390 0.67 0.580081
Target:  5'- ---aGCGCCGCGCaaaaGCCGCaGGCc- -3'
miRNA:   3'- caagCGCGGCGCGga--CGGCGaCUGuu -5'
24629 3' -61.1 NC_005264.1 + 105764 0.67 0.580081
Target:  5'- --aCGaagaUGCGCCcGCCGCUGACGAg -3'
miRNA:   3'- caaGCgcg-GCGCGGaCGGCGACUGUU- -5'
24629 3' -61.1 NC_005264.1 + 104820 0.67 0.577103
Target:  5'- ---gGCGCCGCacgacggccuguccGCCgggGCCGCUGAg-- -3'
miRNA:   3'- caagCGCGGCG--------------CGGa--CGGCGACUguu -5'
24629 3' -61.1 NC_005264.1 + 82965 0.67 0.570169
Target:  5'- -gUCGcCGCCGCGCCc-CCG-UGACGAa -3'
miRNA:   3'- caAGC-GCGGCGCGGacGGCgACUGUU- -5'
24629 3' -61.1 NC_005264.1 + 44640 0.67 0.570169
Target:  5'- -cUUGCGCCGCGCCUuagacuggugcGCCaaGUUcGACGAg -3'
miRNA:   3'- caAGCGCGGCGCGGA-----------CGG--CGA-CUGUU- -5'
24629 3' -61.1 NC_005264.1 + 61844 0.68 0.560299
Target:  5'- --cUGCGCCGCGUacggGuuGUUGGCGAa -3'
miRNA:   3'- caaGCGCGGCGCGga--CggCGACUGUU- -5'
24629 3' -61.1 NC_005264.1 + 26650 0.68 0.560299
Target:  5'- ---aGCGCgGCGCCggcGCCGCgcuagaacGACAAa -3'
miRNA:   3'- caagCGCGgCGCGGa--CGGCGa-------CUGUU- -5'
24629 3' -61.1 NC_005264.1 + 64372 0.68 0.550477
Target:  5'- -cUCGCG-CGUGCCgGCCggGUUGACAAa -3'
miRNA:   3'- caAGCGCgGCGCGGaCGG--CGACUGUU- -5'
24629 3' -61.1 NC_005264.1 + 29454 0.68 0.550477
Target:  5'- --aCGgGCUGCGCC-GCCGCgaUGACu- -3'
miRNA:   3'- caaGCgCGGCGCGGaCGGCG--ACUGuu -5'
24629 3' -61.1 NC_005264.1 + 64299 0.68 0.550477
Target:  5'- -aUCGCgGCCcacaGCGCgUUGCCGCUGcCAAg -3'
miRNA:   3'- caAGCG-CGG----CGCG-GACGGCGACuGUU- -5'
24629 3' -61.1 NC_005264.1 + 86142 0.68 0.550477
Target:  5'- -gUUGCGCCGCGCUccgcGCCaaGCUGgGCAGa -3'
miRNA:   3'- caAGCGCGGCGCGGa---CGG--CGAC-UGUU- -5'
24629 3' -61.1 NC_005264.1 + 7116 0.68 0.540708
Target:  5'- --aCGCGCCguuaGCGCCgGCCGaCUGAg-- -3'
miRNA:   3'- caaGCGCGG----CGCGGaCGGC-GACUguu -5'
24629 3' -61.1 NC_005264.1 + 126143 0.68 0.540708
Target:  5'- --aCGCGCCguuaGCGCCgGCCGaCUGAg-- -3'
miRNA:   3'- caaGCGCGG----CGCGGaCGGC-GACUguu -5'
24629 3' -61.1 NC_005264.1 + 68443 0.68 0.530998
Target:  5'- --cCGCGCCGCgGUCUGCgCGCggagGGCc- -3'
miRNA:   3'- caaGCGCGGCG-CGGACG-GCGa---CUGuu -5'
24629 3' -61.1 NC_005264.1 + 139097 0.68 0.521352
Target:  5'- --aCGaCGUCGCGgCUGCUGCUGAg-- -3'
miRNA:   3'- caaGC-GCGGCGCgGACGGCGACUguu -5'
24629 3' -61.1 NC_005264.1 + 29954 0.68 0.515597
Target:  5'- cUUCGCucacagcaugccaauGuCCGCGUCccugGCCGCUGGCAAc -3'
miRNA:   3'- cAAGCG---------------C-GGCGCGGa---CGGCGACUGUU- -5'
24629 3' -61.1 NC_005264.1 + 126029 0.69 0.465078
Target:  5'- --cCGCGCCuCGCCUgcGCCGCagaGACAAc -3'
miRNA:   3'- caaGCGCGGcGCGGA--CGGCGa--CUGUU- -5'
24629 3' -61.1 NC_005264.1 + 52636 0.69 0.465078
Target:  5'- --cCGUGCCGCcCCUGCCGUuagGAUGAg -3'
miRNA:   3'- caaGCGCGGCGcGGACGGCGa--CUGUU- -5'
24629 3' -61.1 NC_005264.1 + 131992 0.69 0.456003
Target:  5'- ---gGCGgCGCGCC-GCCGCcGACGAc -3'
miRNA:   3'- caagCGCgGCGCGGaCGGCGaCUGUU- -5'
24629 3' -61.1 NC_005264.1 + 78509 0.7 0.438146
Target:  5'- uGUUgGCaCCGCGCUggguacgcGCCGCUGGCGu -3'
miRNA:   3'- -CAAgCGcGGCGCGGa-------CGGCGACUGUu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.