miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24629 5' -56.3 NC_005264.1 + 14653 0.68 0.841474
Target:  5'- -uUCCCuCGCGgcaacgGCAGAgACCAUGcugccGGGGc -3'
miRNA:   3'- guAGGG-GCGC------UGUCUgUGGUAC-----UCCC- -5'
24629 5' -56.3 NC_005264.1 + 116417 0.68 0.841474
Target:  5'- ---gCCCGCGGCAGGuCGCU--GGGGGc -3'
miRNA:   3'- guagGGGCGCUGUCU-GUGGuaCUCCC- -5'
24629 5' -56.3 NC_005264.1 + 140252 0.68 0.833379
Target:  5'- gGUCUCgGCGACGguGACGCCGcuuccaGGGGGc -3'
miRNA:   3'- gUAGGGgCGCUGU--CUGUGGUa-----CUCCC- -5'
24629 5' -56.3 NC_005264.1 + 77011 0.68 0.828437
Target:  5'- gGUCCCaCGUGAguGACGCgCGUGucgcuaacgcuaggaAGGGu -3'
miRNA:   3'- gUAGGG-GCGCUguCUGUG-GUAC---------------UCCC- -5'
24629 5' -56.3 NC_005264.1 + 89188 0.68 0.816666
Target:  5'- uCGUCCCgGCGGCAGGuguCCGUGccuAGGa -3'
miRNA:   3'- -GUAGGGgCGCUGUCUgu-GGUAC---UCCc -5'
24629 5' -56.3 NC_005264.1 + 79816 0.69 0.808061
Target:  5'- --aUCCCGCGuacgcCGGuuAUCGUGAGGGg -3'
miRNA:   3'- guaGGGGCGCu----GUCugUGGUACUCCC- -5'
24629 5' -56.3 NC_005264.1 + 50148 0.69 0.808061
Target:  5'- -uUCCCUGCGAU-GGCGCac-GAGGGc -3'
miRNA:   3'- guAGGGGCGCUGuCUGUGguaCUCCC- -5'
24629 5' -56.3 NC_005264.1 + 150151 0.69 0.799302
Target:  5'- gGUCCCgggcguggucCGCGACGGAC-CCGUGcGGu -3'
miRNA:   3'- gUAGGG----------GCGCUGUCUGuGGUACuCCc -5'
24629 5' -56.3 NC_005264.1 + 31124 0.69 0.799302
Target:  5'- gGUCCCgggcguggucCGCGACGGAC-CCGUGcGGu -3'
miRNA:   3'- gUAGGG----------GCGCUGUCUGuGGUACuCCc -5'
24629 5' -56.3 NC_005264.1 + 24007 0.69 0.790395
Target:  5'- gAUCCCCGCGuCcaugguuccugGGuACACCcgGAGGu -3'
miRNA:   3'- gUAGGGGCGCuG-----------UC-UGUGGuaCUCCc -5'
24629 5' -56.3 NC_005264.1 + 132765 0.69 0.790395
Target:  5'- uGUCCgggCGCGGCGG-CGCCGacGAGGGg -3'
miRNA:   3'- gUAGGg--GCGCUGUCuGUGGUa-CUCCC- -5'
24629 5' -56.3 NC_005264.1 + 122042 0.69 0.784078
Target:  5'- --aCCCCGCGGCAagcggcuccgcucucGGCGCCGcggaagaUGuAGGGg -3'
miRNA:   3'- guaGGGGCGCUGU---------------CUGUGGU-------AC-UCCC- -5'
24629 5' -56.3 NC_005264.1 + 49763 0.69 0.772176
Target:  5'- --aCCCCGCGGCuauAGcACACUuggagGAGGGc -3'
miRNA:   3'- guaGGGGCGCUG---UC-UGUGGua---CUCCC- -5'
24629 5' -56.3 NC_005264.1 + 137637 0.69 0.772176
Target:  5'- -cUCCCCGCucGACAGACACa--GGGcGGc -3'
miRNA:   3'- guAGGGGCG--CUGUCUGUGguaCUC-CC- -5'
24629 5' -56.3 NC_005264.1 + 21227 0.7 0.753471
Target:  5'- --gCCCCgaccGCGAUuuGGACGUCAUGAGGGc -3'
miRNA:   3'- guaGGGG----CGCUG--UCUGUGGUACUCCC- -5'
24629 5' -56.3 NC_005264.1 + 134433 0.7 0.747776
Target:  5'- --aCCCCGCGACAcGCAuacCCAcgcccaggaucggcaUGGGGGa -3'
miRNA:   3'- guaGGGGCGCUGUcUGU---GGU---------------ACUCCC- -5'
24629 5' -56.3 NC_005264.1 + 161976 0.7 0.743959
Target:  5'- aCGUCCgggCGCGGCA-ACGCCucgGAGGGg -3'
miRNA:   3'- -GUAGGg--GCGCUGUcUGUGGua-CUCCC- -5'
24629 5' -56.3 NC_005264.1 + 42949 0.7 0.743959
Target:  5'- aCGUCCgggCGCGGCA-ACGCCucgGAGGGg -3'
miRNA:   3'- -GUAGGg--GCGCUGUcUGUGGua-CUCCC- -5'
24629 5' -56.3 NC_005264.1 + 44615 0.7 0.734352
Target:  5'- -uUCCUgGUGGCGGACAUCAccgcggccGAGGGa -3'
miRNA:   3'- guAGGGgCGCUGUCUGUGGUa-------CUCCC- -5'
24629 5' -56.3 NC_005264.1 + 103613 0.7 0.714888
Target:  5'- gAUUCCCGCGAauuugcucGAgGCCAUGuGGGc -3'
miRNA:   3'- gUAGGGGCGCUgu------CUgUGGUACuCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.