miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24630 3' -59.3 NC_005264.1 + 16155 0.66 0.813966
Target:  5'- uCGCgcagggCGGCaaugCCgccCUGCGCGGAGGUCg -3'
miRNA:   3'- -GCGa-----GCUGg---GGa--GGCGCGUCUCUAGa -5'
24630 3' -59.3 NC_005264.1 + 56149 0.66 0.787946
Target:  5'- uCGCgUUGGCCgcuuuuucgcaCUCCGCGCGGAGuuccUCUg -3'
miRNA:   3'- -GCG-AGCUGGg----------GAGGCGCGUCUCu---AGA- -5'
24630 3' -59.3 NC_005264.1 + 112301 0.66 0.787946
Target:  5'- aGCuUCGACaggCCUCUuggcaGCGCAGAGAcaUCg -3'
miRNA:   3'- gCG-AGCUGg--GGAGG-----CGCGUCUCU--AGa -5'
24630 3' -59.3 NC_005264.1 + 90624 0.66 0.787058
Target:  5'- gGCUCGAcauaaacgcacaaCCCCgaagggCGCGCGGAGAc-- -3'
miRNA:   3'- gCGAGCU-------------GGGGag----GCGCGUCUCUaga -5'
24630 3' -59.3 NC_005264.1 + 31438 0.66 0.778097
Target:  5'- aGCUCGACgggaccgCCCUCCGaCG-AGAGcGUCg -3'
miRNA:   3'- gCGAGCUG-------GGGAGGC-GCgUCUC-UAGa -5'
24630 3' -59.3 NC_005264.1 + 150465 0.66 0.778097
Target:  5'- aGCUCGACgggaccgCCCUCCGaCG-AGAGcGUCg -3'
miRNA:   3'- gCGAGCUG-------GGGAGGC-GCgUCUC-UAGa -5'
24630 3' -59.3 NC_005264.1 + 92738 0.66 0.769926
Target:  5'- aGCUCGAUaaggUCCUCCGCGCcGAcagCUa -3'
miRNA:   3'- gCGAGCUG----GGGAGGCGCGuCUcuaGA- -5'
24630 3' -59.3 NC_005264.1 + 37918 0.67 0.760739
Target:  5'- aGCaaGACCCC-CCGCaGacgAGAGGUCUa -3'
miRNA:   3'- gCGagCUGGGGaGGCG-Cg--UCUCUAGA- -5'
24630 3' -59.3 NC_005264.1 + 156944 0.67 0.751443
Target:  5'- aGCaaGACCCCcCCGCaGacgAGAGGUCUa -3'
miRNA:   3'- gCGagCUGGGGaGGCG-Cg--UCUCUAGA- -5'
24630 3' -59.3 NC_005264.1 + 60682 0.67 0.742049
Target:  5'- aGCUgGGCUCCcaaggCCucCGCAGAGGUCa -3'
miRNA:   3'- gCGAgCUGGGGa----GGc-GCGUCUCUAGa -5'
24630 3' -59.3 NC_005264.1 + 29580 0.67 0.732564
Target:  5'- cCGCUCGGCCUgUuuGCcuGCGGcuccAGAUCg -3'
miRNA:   3'- -GCGAGCUGGGgAggCG--CGUC----UCUAGa -5'
24630 3' -59.3 NC_005264.1 + 124074 0.67 0.713357
Target:  5'- gGCaCGuACCCUUCUG-GCAGGGGUCg -3'
miRNA:   3'- gCGaGC-UGGGGAGGCgCGUCUCUAGa -5'
24630 3' -59.3 NC_005264.1 + 5047 0.67 0.713357
Target:  5'- gGCaCGuACCCUUCUG-GCAGGGGUCg -3'
miRNA:   3'- gCGaGC-UGGGGAGGCgCGUCUCUAGa -5'
24630 3' -59.3 NC_005264.1 + 103254 0.68 0.703652
Target:  5'- aCGUauagUGGCCUucUUCUGCGCGGAGGUCc -3'
miRNA:   3'- -GCGa---GCUGGG--GAGGCGCGUCUCUAGa -5'
24630 3' -59.3 NC_005264.1 + 82059 0.68 0.693889
Target:  5'- gGCUaCGGCCaggccagaUCUCUGCGCGGAGGggUCg -3'
miRNA:   3'- gCGA-GCUGG--------GGAGGCGCGUCUCU--AGa -5'
24630 3' -59.3 NC_005264.1 + 7576 0.68 0.693889
Target:  5'- cCGC-CGccuACCCCgcgCCGCuGCGGAGAUg- -3'
miRNA:   3'- -GCGaGC---UGGGGa--GGCG-CGUCUCUAga -5'
24630 3' -59.3 NC_005264.1 + 125258 0.68 0.688008
Target:  5'- aGCUCGGCgcgacuuguucuucgCCCUCCGCgGCGGcGcgCUg -3'
miRNA:   3'- gCGAGCUG---------------GGGAGGCG-CGUCuCuaGA- -5'
24630 3' -59.3 NC_005264.1 + 1897 0.68 0.674226
Target:  5'- aGCUacaGACCCCgCCGCGacugcGGGAUCc -3'
miRNA:   3'- gCGAg--CUGGGGaGGCGCgu---CUCUAGa -5'
24630 3' -59.3 NC_005264.1 + 65365 0.68 0.674226
Target:  5'- cCGCUUGACgCCgCCGgGUAGAG-UCUc -3'
miRNA:   3'- -GCGAGCUGgGGaGGCgCGUCUCuAGA- -5'
24630 3' -59.3 NC_005264.1 + 120923 0.68 0.674226
Target:  5'- aGCUacaGACCCCgCCGCGacugcGGGAUCc -3'
miRNA:   3'- gCGAg--CUGGGGaGGCGCgu---CUCUAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.