miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24631 3' -62.2 NC_005264.1 + 67033 0.66 0.694714
Target:  5'- uUCGaGGGCCuCAGGAuAgGCUacaCCgCCCa -3'
miRNA:   3'- gAGC-CCCGG-GUUCU-UgCGAg--GGgGGG- -5'
24631 3' -62.2 NC_005264.1 + 120005 0.66 0.694714
Target:  5'- -cUGGGGCggCAGGuggGC-CUCCCCCCUc -3'
miRNA:   3'- gaGCCCCGg-GUUCu--UGcGAGGGGGGG- -5'
24631 3' -62.2 NC_005264.1 + 85906 0.66 0.691842
Target:  5'- -gCGGGGUggcgaCgGAGAAuagaagggggucguCGCUCCCUCCUg -3'
miRNA:   3'- gaGCCCCG-----GgUUCUU--------------GCGAGGGGGGG- -5'
24631 3' -62.2 NC_005264.1 + 145638 0.66 0.685126
Target:  5'- uUC-GGGCCaucuuuacgAAGAACGCUgCCCgCCg -3'
miRNA:   3'- gAGcCCCGGg--------UUCUUGCGAgGGGgGG- -5'
24631 3' -62.2 NC_005264.1 + 22897 0.66 0.685126
Target:  5'- -gCaGGGCCCGAGGgucucuucucgcACGCUgUCCUCUg -3'
miRNA:   3'- gaGcCCCGGGUUCU------------UGCGAgGGGGGG- -5'
24631 3' -62.2 NC_005264.1 + 82252 0.66 0.682242
Target:  5'- uUCGGGGCUCGcgacaggcggcaccGGAGCGCgaagggUCCgCCg -3'
miRNA:   3'- gAGCCCCGGGU--------------UCUUGCGa-----GGGgGGg -5'
24631 3' -62.2 NC_005264.1 + 140981 0.66 0.675498
Target:  5'- cCUCGGGGCUgAuGAAaauaCUCCCggaCCCg -3'
miRNA:   3'- -GAGCCCCGGgUuCUUgc--GAGGGg--GGG- -5'
24631 3' -62.2 NC_005264.1 + 146618 0.66 0.675498
Target:  5'- --gGGGGCUCAgagGGuAGCGCggcgCgUCCCCCg -3'
miRNA:   3'- gagCCCCGGGU---UC-UUGCGa---G-GGGGGG- -5'
24631 3' -62.2 NC_005264.1 + 25673 0.66 0.675498
Target:  5'- uCUgGGGGCagCAgaagggacGGGACGCgcaugCCCCgCCa -3'
miRNA:   3'- -GAgCCCCGg-GU--------UCUUGCGa----GGGGgGG- -5'
24631 3' -62.2 NC_005264.1 + 76970 0.66 0.675498
Target:  5'- cCUCGGuGGUCaCAAGcACGCcaucuaugggccUCCCUCCg -3'
miRNA:   3'- -GAGCC-CCGG-GUUCuUGCG------------AGGGGGGg -5'
24631 3' -62.2 NC_005264.1 + 160182 0.66 0.672604
Target:  5'- gUCGGGGCCaGAGGacucuguagacgagACGgagacagaagaCUCCgCCCCg -3'
miRNA:   3'- gAGCCCCGGgUUCU--------------UGC-----------GAGGgGGGG- -5'
24631 3' -62.2 NC_005264.1 + 41155 0.66 0.672604
Target:  5'- gUCGGGGCCaGAGGacucuguagacgagACGgagacagaagaCUCCgCCCCg -3'
miRNA:   3'- gAGCCCCGGgUUCU--------------UGC-----------GAGGgGGGG- -5'
24631 3' -62.2 NC_005264.1 + 8223 0.67 0.636742
Target:  5'- -gCGGccaucGGCCgAAGccgcAGCaGCUCCCCCCUc -3'
miRNA:   3'- gaGCC-----CCGGgUUC----UUG-CGAGGGGGGG- -5'
24631 3' -62.2 NC_005264.1 + 127250 0.67 0.636742
Target:  5'- -gCGGccaucGGCCgAAGccgcAGCaGCUCCCCCCUc -3'
miRNA:   3'- gaGCC-----CCGGgUUC----UUG-CGAGGGGGGG- -5'
24631 3' -62.2 NC_005264.1 + 109943 0.67 0.627027
Target:  5'- -aUGGGGuCCCAugccaccACGCagCCCCCUCg -3'
miRNA:   3'- gaGCCCC-GGGUucu----UGCGa-GGGGGGG- -5'
24631 3' -62.2 NC_005264.1 + 80202 0.67 0.617316
Target:  5'- -cUGGGGCCaCGcaAACGCcacgcgcauaUCCCCuCCCa -3'
miRNA:   3'- gaGCCCCGG-GUucUUGCG----------AGGGG-GGG- -5'
24631 3' -62.2 NC_005264.1 + 21830 0.67 0.617316
Target:  5'- gUCGguaGGGUCUucGAugGUagUUCCCCCCg -3'
miRNA:   3'- gAGC---CCCGGGuuCUugCG--AGGGGGGG- -5'
24631 3' -62.2 NC_005264.1 + 129089 0.67 0.607615
Target:  5'- cCUCGauccuGGCCCuAGAuguuaGCaGCUCCUCCCUg -3'
miRNA:   3'- -GAGCc----CCGGGuUCU-----UG-CGAGGGGGGG- -5'
24631 3' -62.2 NC_005264.1 + 98110 0.67 0.604708
Target:  5'- -cCGGGGUacacaucauagacaCgGAGGACGCaguaaacucgcUCCCCUCCa -3'
miRNA:   3'- gaGCCCCG--------------GgUUCUUGCG-----------AGGGGGGG- -5'
24631 3' -62.2 NC_005264.1 + 490 0.67 0.588268
Target:  5'- --aGGGGUCCccc--CGCUCCUCCCUc -3'
miRNA:   3'- gagCCCCGGGuucuuGCGAGGGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.