miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24631 5' -50.4 NC_005264.1 + 115050 0.66 0.997421
Target:  5'- cCGGC-GAAAGCcgaGGUCuUCGUGcaGGCCa -3'
miRNA:   3'- aGUUGuCUUUCGa--CCAG-AGCAC--CUGG- -5'
24631 5' -50.4 NC_005264.1 + 131986 0.66 0.996947
Target:  5'- aCGACAGGccGgUGG-Cg-GUGGGCCg -3'
miRNA:   3'- aGUUGUCUuuCgACCaGagCACCUGG- -5'
24631 5' -50.4 NC_005264.1 + 4864 0.66 0.996947
Target:  5'- cUCGGCcacgcugcgAGGAAGauaggGGUCUCcggGGACCg -3'
miRNA:   3'- -AGUUG---------UCUUUCga---CCAGAGca-CCUGG- -5'
24631 5' -50.4 NC_005264.1 + 123890 0.66 0.996947
Target:  5'- cUCGGCcacgcugcgAGGAAGauaggGGUCUCcggGGACCg -3'
miRNA:   3'- -AGUUG---------UCUUUCga---CCAGAGca-CCUGG- -5'
24631 5' -50.4 NC_005264.1 + 39091 0.66 0.996792
Target:  5'- cUCGGCGGgcAGCgGcGUCuggaccagcugcugUCGUGGACg -3'
miRNA:   3'- -AGUUGUCuuUCGaC-CAG--------------AGCACCUGg -5'
24631 5' -50.4 NC_005264.1 + 158118 0.66 0.996792
Target:  5'- cUCGGCGGgcAGCgGcGUCuggaccagcugcugUCGUGGACg -3'
miRNA:   3'- -AGUUGUCuuUCGaC-CAG--------------AGCACCUGg -5'
24631 5' -50.4 NC_005264.1 + 125149 0.66 0.996403
Target:  5'- gCAACGGGcguGGGCUGcGaugCUUGUGGggcGCCg -3'
miRNA:   3'- aGUUGUCU---UUCGAC-Ca--GAGCACC---UGG- -5'
24631 5' -50.4 NC_005264.1 + 116421 0.66 0.995783
Target:  5'- gCGGCAGGucGCUGGgggCGUcuGGCCg -3'
miRNA:   3'- aGUUGUCUuuCGACCagaGCAc-CUGG- -5'
24631 5' -50.4 NC_005264.1 + 49610 0.66 0.995511
Target:  5'- aCGACGGggGGCg---CUCGgugggguaccaggGGGCCa -3'
miRNA:   3'- aGUUGUCuuUCGaccaGAGCa------------CCUGG- -5'
24631 5' -50.4 NC_005264.1 + 150244 0.66 0.995077
Target:  5'- cUCcAgAGAGAGCUGaaagCUgaUGUGGGCCg -3'
miRNA:   3'- -AGuUgUCUUUCGACca--GA--GCACCUGG- -5'
24631 5' -50.4 NC_005264.1 + 28407 0.66 0.995077
Target:  5'- gCGGCAGucugccuauAGAGCUcccGGUCUUGUcagaugccgcGGGCCg -3'
miRNA:   3'- aGUUGUC---------UUUCGA---CCAGAGCA----------CCUGG- -5'
24631 5' -50.4 NC_005264.1 + 31217 0.66 0.995077
Target:  5'- cUCcAgAGAGAGCUGaaagCUgaUGUGGGCCg -3'
miRNA:   3'- -AGuUgUCUUUCGACca--GA--GCACCUGG- -5'
24631 5' -50.4 NC_005264.1 + 140176 0.67 0.992369
Target:  5'- gCGGC-GAGAcGCUcGUCcuUCGUGGGCCu -3'
miRNA:   3'- aGUUGuCUUU-CGAcCAG--AGCACCUGG- -5'
24631 5' -50.4 NC_005264.1 + 54262 0.67 0.992369
Target:  5'- gUCGAguGGGAGCgGGg--CGaGGACCa -3'
miRNA:   3'- -AGUUguCUUUCGaCCagaGCaCCUGG- -5'
24631 5' -50.4 NC_005264.1 + 79876 0.67 0.99124
Target:  5'- uUCGGCGGAcaucgccggcucAGGcCUGGUCUuugcgugcgCGUGG-CCg -3'
miRNA:   3'- -AGUUGUCU------------UUC-GACCAGA---------GCACCuGG- -5'
24631 5' -50.4 NC_005264.1 + 37573 0.67 0.989984
Target:  5'- gCGACGGAGgcGGCaaGUCUCGcgGcGGCCg -3'
miRNA:   3'- aGUUGUCUU--UCGacCAGAGCa-C-CUGG- -5'
24631 5' -50.4 NC_005264.1 + 156600 0.67 0.989984
Target:  5'- gCGACGGAGgcGGCaaGUCUCGcgGcGGCCg -3'
miRNA:   3'- aGUUGUCUU--UCGacCAGAGCa-C-CUGG- -5'
24631 5' -50.4 NC_005264.1 + 43998 0.7 0.961702
Target:  5'- -aGGCGGAcuuGGGCagGGUCgagGUGGGCCa -3'
miRNA:   3'- agUUGUCU---UUCGa-CCAGag-CACCUGG- -5'
24631 5' -50.4 NC_005264.1 + 100745 0.7 0.961342
Target:  5'- gUUAACAccGggGGCacggGGUCUaguaauaCGUGGGCCc -3'
miRNA:   3'- -AGUUGU--CuuUCGa---CCAGA-------GCACCUGG- -5'
24631 5' -50.4 NC_005264.1 + 55045 0.7 0.957999
Target:  5'- ---gUAGAGAGCgagGGUCUCGaGGAgCu -3'
miRNA:   3'- aguuGUCUUUCGa--CCAGAGCaCCUgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.