miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24632 3' -56.8 NC_005264.1 + 47055 0.66 0.900081
Target:  5'- -uGUCUauGGGCUGGGAC-AAGCugAc -3'
miRNA:   3'- agUAGAgcCCCGGUCCUGcUUCGugU- -5'
24632 3' -56.8 NC_005264.1 + 116999 0.66 0.89361
Target:  5'- -aGUCUUGGGGgCGGucuGCGcGGCGCAu -3'
miRNA:   3'- agUAGAGCCCCgGUCc--UGCuUCGUGU- -5'
24632 3' -56.8 NC_005264.1 + 47799 0.66 0.89361
Target:  5'- ---cCUCGGcuuucGCCGGGGCGcauaAGGCGCAg -3'
miRNA:   3'- aguaGAGCCc----CGGUCCUGC----UUCGUGU- -5'
24632 3' -56.8 NC_005264.1 + 8781 0.66 0.886913
Target:  5'- aCGg--CGGgcgucGGCCAGGACGGccAGCGCu -3'
miRNA:   3'- aGUagaGCC-----CCGGUCCUGCU--UCGUGu -5'
24632 3' -56.8 NC_005264.1 + 127807 0.66 0.886913
Target:  5'- aCGg--CGGgcgucGGCCAGGACGGccAGCGCu -3'
miRNA:   3'- aGUagaGCC-----CCGGUCCUGCU--UCGUGu -5'
24632 3' -56.8 NC_005264.1 + 16557 0.66 0.879994
Target:  5'- uUCAgcgCggugggCGGcGCCGGGGCGGcGGCGCAc -3'
miRNA:   3'- -AGUa--Ga-----GCCcCGGUCCUGCU-UCGUGU- -5'
24632 3' -56.8 NC_005264.1 + 126209 0.66 0.872858
Target:  5'- cUCAUCgcucCGGGGCCAaucuGuGAUcgGGAGCGCu -3'
miRNA:   3'- -AGUAGa---GCCCCGGU----C-CUG--CUUCGUGu -5'
24632 3' -56.8 NC_005264.1 + 27418 0.66 0.872858
Target:  5'- aUCGcgCUCGGGGgCAuGAUGAGGCuuuCAg -3'
miRNA:   3'- -AGUa-GAGCCCCgGUcCUGCUUCGu--GU- -5'
24632 3' -56.8 NC_005264.1 + 44901 0.66 0.864763
Target:  5'- gUCGUCU-GGGG-CGGGAgGAgagauccGGCGCAa -3'
miRNA:   3'- -AGUAGAgCCCCgGUCCUgCU-------UCGUGU- -5'
24632 3' -56.8 NC_005264.1 + 116167 0.66 0.864763
Target:  5'- -gGUCUCgaccaguGGGGCCAGGAUGuucuucCACGa -3'
miRNA:   3'- agUAGAG-------CCCCGGUCCUGCuuc---GUGU- -5'
24632 3' -56.8 NC_005264.1 + 98076 0.67 0.850197
Target:  5'- aUCGUUUCGcGGCCaaaucuaucAGGGCGAuccuuGCGCGg -3'
miRNA:   3'- -AGUAGAGCcCCGG---------UCCUGCUu----CGUGU- -5'
24632 3' -56.8 NC_005264.1 + 58358 0.67 0.850197
Target:  5'- gUCGUacucuggCGGGGCCGGcGCGAuauGCGCc -3'
miRNA:   3'- -AGUAga-----GCCCCGGUCcUGCUu--CGUGu -5'
24632 3' -56.8 NC_005264.1 + 159693 0.67 0.84941
Target:  5'- cCGUUUCGGuugccGCCAGGACGAugacgacGGCuACGa -3'
miRNA:   3'- aGUAGAGCCc----CGGUCCUGCU-------UCG-UGU- -5'
24632 3' -56.8 NC_005264.1 + 40667 0.67 0.84941
Target:  5'- cCGUUUCGGuugccGCCAGGACGAugacgacGGCuACGa -3'
miRNA:   3'- aGUAGAGCCc----CGGUCCUGCU-------UCG-UGU- -5'
24632 3' -56.8 NC_005264.1 + 126292 0.67 0.842245
Target:  5'- ----gUCGGcGCCAGGACGAAG-ACGg -3'
miRNA:   3'- aguagAGCCcCGGUCCUGCUUCgUGU- -5'
24632 3' -56.8 NC_005264.1 + 7265 0.67 0.842245
Target:  5'- ----gUCGGcGCCAGGACGAAG-ACGg -3'
miRNA:   3'- aguagAGCCcCGGUCCUGCUUCgUGU- -5'
24632 3' -56.8 NC_005264.1 + 18435 0.67 0.834105
Target:  5'- cUCGcUCggcgCGGGGUCgaAGGACGuguagGAGCACGu -3'
miRNA:   3'- -AGU-AGa---GCCCCGG--UCCUGC-----UUCGUGU- -5'
24632 3' -56.8 NC_005264.1 + 46397 0.67 0.825784
Target:  5'- -gGUCgUCaGGGCCAGGuccgccGCGAGGCuGCAc -3'
miRNA:   3'- agUAG-AGcCCCGGUCC------UGCUUCG-UGU- -5'
24632 3' -56.8 NC_005264.1 + 79941 0.67 0.817289
Target:  5'- cCAcUCUCaaauGGGaGUUAGGGCGAAGCAUc -3'
miRNA:   3'- aGU-AGAG----CCC-CGGUCCUGCUUCGUGu -5'
24632 3' -56.8 NC_005264.1 + 56166 0.67 0.817289
Target:  5'- gCGUCUCcgggucuaggGGGGCUAGGcucucACGggGUugGu -3'
miRNA:   3'- aGUAGAG----------CCCCGGUCC-----UGCuuCGugU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.