miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24632 5' -55 NC_005264.1 + 13681 0.66 0.89767
Target:  5'- -gUGUCgguaaCCG-CCAUGGCCCAGGg-- -3'
miRNA:   3'- uaAUAGa----GGCaGGUGCCGGGUUCgaa -5'
24632 5' -55 NC_005264.1 + 7389 0.66 0.89767
Target:  5'- ---uUCUUCGaUCGCGGCCCcGGCg- -3'
miRNA:   3'- uaauAGAGGCaGGUGCCGGGuUCGaa -5'
24632 5' -55 NC_005264.1 + 49789 0.67 0.890208
Target:  5'- --cGUCUCgCGUaagaucgCCGCGGCCCAGucGCg- -3'
miRNA:   3'- uaaUAGAG-GCA-------GGUGCCGGGUU--CGaa -5'
24632 5' -55 NC_005264.1 + 22888 0.68 0.853561
Target:  5'- --cAUCUCCGggCAgGGCCCGAGg-- -3'
miRNA:   3'- uaaUAGAGGCagGUgCCGGGUUCgaa -5'
24632 5' -55 NC_005264.1 + 10152 0.68 0.853561
Target:  5'- --aGUCUCCaccgcGUCCAgGGCCUcGGCg- -3'
miRNA:   3'- uaaUAGAGG-----CAGGUgCCGGGuUCGaa -5'
24632 5' -55 NC_005264.1 + 55223 0.68 0.845436
Target:  5'- ---uUCUCC---CGCGGCCCAGGCg- -3'
miRNA:   3'- uaauAGAGGcagGUGCCGGGUUCGaa -5'
24632 5' -55 NC_005264.1 + 26387 0.68 0.837108
Target:  5'- --cGUCUCUGagCGCGGCCUcAGCg- -3'
miRNA:   3'- uaaUAGAGGCagGUGCCGGGuUCGaa -5'
24632 5' -55 NC_005264.1 + 56803 0.68 0.819873
Target:  5'- aGUUAUgCUuuGUCCugcgcugcgcgGCGGCCCuAGCUa -3'
miRNA:   3'- -UAAUA-GAggCAGG-----------UGCCGGGuUCGAa -5'
24632 5' -55 NC_005264.1 + 119539 0.68 0.819873
Target:  5'- ----cCUCCcUCCGUGGCCCAGGCc- -3'
miRNA:   3'- uaauaGAGGcAGGUGCCGGGUUCGaa -5'
24632 5' -55 NC_005264.1 + 512 0.68 0.819873
Target:  5'- ----cCUCCcUCCGUGGCCCAGGCc- -3'
miRNA:   3'- uaauaGAGGcAGGUGCCGGGUUCGaa -5'
24632 5' -55 NC_005264.1 + 51917 0.69 0.792699
Target:  5'- aAUUGUCUCCGgucgUCCGCG--CCGAGCUUg -3'
miRNA:   3'- -UAAUAGAGGC----AGGUGCcgGGUUCGAA- -5'
24632 5' -55 NC_005264.1 + 24987 0.7 0.744498
Target:  5'- gGUUGUCcCCGUaCCcccuGCGGCUCAGGCg- -3'
miRNA:   3'- -UAAUAGaGGCA-GG----UGCCGGGUUCGaa -5'
24632 5' -55 NC_005264.1 + 82612 1.03 0.007584
Target:  5'- cAUUAUCUCCGUCCACGGCCCAAGCUUc -3'
miRNA:   3'- -UAAUAGAGGCAGGUGCCGGGUUCGAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.