miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24633 3' -63.5 NC_005264.1 + 3760 0.65 0.642651
Target:  5'- uGCCGCCgggGCGCUGcGGgcccuuggucgaCCGCCGCc- -3'
miRNA:   3'- -UGGCGGg--UGCGAC-CCaa----------GGCGGCGcc -5'
24633 3' -63.5 NC_005264.1 + 19862 0.65 0.642651
Target:  5'- cCCGCCuCAUGCccgagagaCCGCCGCGGc -3'
miRNA:   3'- uGGCGG-GUGCGacccaa--GGCGGCGCC- -5'
24633 3' -63.5 NC_005264.1 + 122786 0.65 0.642651
Target:  5'- uGCCGCCgggGCGCUGcGGgcccuuggucgaCCGCCGCc- -3'
miRNA:   3'- -UGGCGGg--UGCGAC-CCaa----------GGCGGCGcc -5'
24633 3' -63.5 NC_005264.1 + 7931 0.66 0.636885
Target:  5'- cGCgCGUCCACGCgucg-UCCacgGCCGCGGc -3'
miRNA:   3'- -UG-GCGGGUGCGacccaAGG---CGGCGCC- -5'
24633 3' -63.5 NC_005264.1 + 120188 0.66 0.636885
Target:  5'- gGCCGCCagucugccggCGCGCgaugGGGguaCGCaGCGGa -3'
miRNA:   3'- -UGGCGG----------GUGCGa---CCCaagGCGgCGCC- -5'
24633 3' -63.5 NC_005264.1 + 44790 0.66 0.636885
Target:  5'- cGuuGCCgACGCcGcGGU--CGCCGCGGc -3'
miRNA:   3'- -UggCGGgUGCGaC-CCAagGCGGCGCC- -5'
24633 3' -63.5 NC_005264.1 + 1161 0.66 0.636885
Target:  5'- gGCCGCCagucugccggCGCGCgaugGGGguaCGCaGCGGa -3'
miRNA:   3'- -UGGCGG----------GUGCGa---CCCaagGCGgCGCC- -5'
24633 3' -63.5 NC_005264.1 + 64409 0.66 0.633041
Target:  5'- gGCCaagGCCgACGCcgcGGGcacggcgaugacgUCUGCCGCGGc -3'
miRNA:   3'- -UGG---CGGgUGCGa--CCCa------------AGGCGGCGCC- -5'
24633 3' -63.5 NC_005264.1 + 136299 0.66 0.627274
Target:  5'- uACCGUCCcaGCGCaguUGGGaaucccgugUCCGaaagaCCGCGGg -3'
miRNA:   3'- -UGGCGGG--UGCG---ACCCa--------AGGC-----GGCGCC- -5'
24633 3' -63.5 NC_005264.1 + 106017 0.66 0.627274
Target:  5'- aGCCGCUa--GCUaGGG--CCGCCGCGc -3'
miRNA:   3'- -UGGCGGgugCGA-CCCaaGGCGGCGCc -5'
24633 3' -63.5 NC_005264.1 + 157544 0.66 0.627274
Target:  5'- gUCGCCCGCcCcacGGGUcagCCGCCGCc- -3'
miRNA:   3'- uGGCGGGUGcGa--CCCAa--GGCGGCGcc -5'
24633 3' -63.5 NC_005264.1 + 70721 0.66 0.627274
Target:  5'- cGCCGaacgCUGCGCUGuGUgCCGCCGCa- -3'
miRNA:   3'- -UGGCg---GGUGCGACcCAaGGCGGCGcc -5'
24633 3' -63.5 NC_005264.1 + 38517 0.66 0.627274
Target:  5'- gUCGCCCGCcCcacGGGUcagCCGCCGCc- -3'
miRNA:   3'- uGGCGGGUGcGa--CCCAa--GGCGGCGcc -5'
24633 3' -63.5 NC_005264.1 + 99675 0.66 0.626314
Target:  5'- --gGCCCACGCggcaGGGUUCaugcccuCGCCGUc- -3'
miRNA:   3'- uggCGGGUGCGa---CCCAAG-------GCGGCGcc -5'
24633 3' -63.5 NC_005264.1 + 7577 0.66 0.617667
Target:  5'- cGCCGCCUAcccCGCg-----CCGCUGCGGa -3'
miRNA:   3'- -UGGCGGGU---GCGacccaaGGCGGCGCC- -5'
24633 3' -63.5 NC_005264.1 + 157309 0.66 0.617667
Target:  5'- cCCGCuCCGCGCgaga---CGCCGCGGc -3'
miRNA:   3'- uGGCG-GGUGCGacccaagGCGGCGCC- -5'
24633 3' -63.5 NC_005264.1 + 138356 0.66 0.617667
Target:  5'- gGCCGCCaaauaggcccuCACGa---GUuaUCCGCCGCGGa -3'
miRNA:   3'- -UGGCGG-----------GUGCgaccCA--AGGCGGCGCC- -5'
24633 3' -63.5 NC_005264.1 + 103038 0.66 0.617667
Target:  5'- -aCGUCUACGUacGGcUCCGCgGCGGa -3'
miRNA:   3'- ugGCGGGUGCGacCCaAGGCGgCGCC- -5'
24633 3' -63.5 NC_005264.1 + 113035 0.66 0.617667
Target:  5'- uCCGCggCCGCGaCUGGG--CCGCgGCGa -3'
miRNA:   3'- uGGCG--GGUGC-GACCCaaGGCGgCGCc -5'
24633 3' -63.5 NC_005264.1 + 146372 0.66 0.617667
Target:  5'- gUCGCCCcccaGCGCUGGuucgaccacGUUCacacCCGCGGg -3'
miRNA:   3'- uGGCGGG----UGCGACC---------CAAGgc--GGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.