miRNA display CGI


Results 1 - 20 of 35 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24633 5' -53.9 NC_005264.1 + 3008 0.66 0.975223
Target:  5'- gGCCgGCGGCucGGcUCUGggGUccGAUcauggUCGg -3'
miRNA:   3'- -CGGgCGCCG--CCaAGACuuCA--UUG-----AGC- -5'
24633 5' -53.9 NC_005264.1 + 57275 0.66 0.972573
Target:  5'- aGCCCGCGGgGGUcuccauuguaUcCUGAGcuagcGgcACUCa -3'
miRNA:   3'- -CGGGCGCCgCCA----------A-GACUU-----CauUGAGc -5'
24633 5' -53.9 NC_005264.1 + 33850 0.66 0.972573
Target:  5'- cGCgCCGCGGCaGagCUGAAGaAcguggagcguccGCUCGa -3'
miRNA:   3'- -CG-GGCGCCGcCaaGACUUCaU------------UGAGC- -5'
24633 5' -53.9 NC_005264.1 + 54991 0.66 0.966671
Target:  5'- -aCCGCGGCGGcaagaacGAGGUGACg-- -3'
miRNA:   3'- cgGGCGCCGCCaaga---CUUCAUUGagc -5'
24633 5' -53.9 NC_005264.1 + 111006 0.66 0.964738
Target:  5'- cGCCCGCGgaGCgcccaccccucuccuGGUUC-GAagcGGUGGCUCGc -3'
miRNA:   3'- -CGGGCGC--CG---------------CCAAGaCU---UCAUUGAGC- -5'
24633 5' -53.9 NC_005264.1 + 49921 0.66 0.959925
Target:  5'- uCCCGCuGGCGGcgaCUGAGGaUGagaagguccuGCUCGa -3'
miRNA:   3'- cGGGCG-CCGCCaa-GACUUC-AU----------UGAGC- -5'
24633 5' -53.9 NC_005264.1 + 94596 0.67 0.956222
Target:  5'- cGCCCGCGGCGcGggCaUGGcuUGGCggugCGg -3'
miRNA:   3'- -CGGGCGCCGC-CaaG-ACUucAUUGa---GC- -5'
24633 5' -53.9 NC_005264.1 + 126035 0.67 0.952292
Target:  5'- gGCCCGCGGCGGcuccUCUccAGUAcccccuuUUCGu -3'
miRNA:   3'- -CGGGCGCCGCCa---AGAcuUCAUu------GAGC- -5'
24633 5' -53.9 NC_005264.1 + 125461 0.67 0.952292
Target:  5'- uCUCGCGGCGGcgucgCUGgcGgagAACUCc -3'
miRNA:   3'- cGGGCGCCGCCaa---GACuuCa--UUGAGc -5'
24633 5' -53.9 NC_005264.1 + 7008 0.67 0.952292
Target:  5'- gGCCCGCGGCGGcuccUCUccAGUAcccccuuUUCGu -3'
miRNA:   3'- -CGGGCGCCGCCa---AGAcuUCAUu------GAGC- -5'
24633 5' -53.9 NC_005264.1 + 6434 0.67 0.952292
Target:  5'- uCUCGCGGCGGcgucgCUGgcGgagAACUCc -3'
miRNA:   3'- cGGGCGCCGCCaa---GACuuCa--UUGAGc -5'
24633 5' -53.9 NC_005264.1 + 31935 0.67 0.951887
Target:  5'- gGCCuCGCGGCucGGcUCUGAgcucgcgAGUGGCggCGa -3'
miRNA:   3'- -CGG-GCGCCG--CCaAGACU-------UCAUUGa-GC- -5'
24633 5' -53.9 NC_005264.1 + 50263 0.67 0.948133
Target:  5'- -gCCGCGGCGGcgaUUCcGA-GUuGCUCGu -3'
miRNA:   3'- cgGGCGCCGCC---AAGaCUuCAuUGAGC- -5'
24633 5' -53.9 NC_005264.1 + 145663 0.67 0.948133
Target:  5'- uGCCCGcCGGCGGaaccUUC--AAGUGgguACUCGu -3'
miRNA:   3'- -CGGGC-GCCGCC----AAGacUUCAU---UGAGC- -5'
24633 5' -53.9 NC_005264.1 + 134410 0.67 0.943287
Target:  5'- gGCCCGCGGCa--UCUGAcaagaccGGgaGCUCu -3'
miRNA:   3'- -CGGGCGCCGccaAGACU-------UCauUGAGc -5'
24633 5' -53.9 NC_005264.1 + 84211 0.67 0.939111
Target:  5'- -gCCGCGGCGGUUaacaGAAGaGGCgccgCGa -3'
miRNA:   3'- cgGGCGCCGCCAAga--CUUCaUUGa---GC- -5'
24633 5' -53.9 NC_005264.1 + 52947 0.68 0.934244
Target:  5'- cGCCCGCGGCGcaUUgcgccgcGggGUAuuccGCUCu -3'
miRNA:   3'- -CGGGCGCCGCcaAGa------CuuCAU----UGAGc -5'
24633 5' -53.9 NC_005264.1 + 133042 0.68 0.934244
Target:  5'- uUCCGCGGCGGUgcgCgUGuuucUGGCUCGc -3'
miRNA:   3'- cGGGCGCCGCCAa--G-ACuuc-AUUGAGC- -5'
24633 5' -53.9 NC_005264.1 + 20294 0.68 0.934244
Target:  5'- cGCuuGCGGCcccgaGGggCUGAGGUcGCUg- -3'
miRNA:   3'- -CGggCGCCG-----CCaaGACUUCAuUGAgc -5'
24633 5' -53.9 NC_005264.1 + 52961 0.68 0.934244
Target:  5'- cGCCucuaCGCGGCGGUgCUGcg--AACUCa -3'
miRNA:   3'- -CGG----GCGCCGCCAaGACuucaUUGAGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.