miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24634 3' -55.4 NC_005264.1 + 74475 0.66 0.945046
Target:  5'- cGUGAauccuaGCCCCAUGucuacGUgGCUgCGCGGCu- -3'
miRNA:   3'- -CGCU------UGGGGUAC-----UAgCGA-GCGUCGcu -5'
24634 3' -55.4 NC_005264.1 + 13030 0.66 0.945046
Target:  5'- cGCgGGACCCUAcGGcCGCUCGUcugcugucguuuGGCGGg -3'
miRNA:   3'- -CG-CUUGGGGUaCUaGCGAGCG------------UCGCU- -5'
24634 3' -55.4 NC_005264.1 + 29598 0.66 0.945046
Target:  5'- uGCG-GCUCCA-GAUCGaagcguagCGCGGCGGc -3'
miRNA:   3'- -CGCuUGGGGUaCUAGCga------GCGUCGCU- -5'
24634 3' -55.4 NC_005264.1 + 49909 0.66 0.940513
Target:  5'- uGCGcGCCCaaauccCGCUgGCGGCGAc -3'
miRNA:   3'- -CGCuUGGGguacuaGCGAgCGUCGCU- -5'
24634 3' -55.4 NC_005264.1 + 146755 0.66 0.940513
Target:  5'- gGCGGACCCggcaaCAgcaagCGCcgCGCGGCGGu -3'
miRNA:   3'- -CGCUUGGG-----GUacua-GCGa-GCGUCGCU- -5'
24634 3' -55.4 NC_005264.1 + 93575 0.66 0.940513
Target:  5'- cGCGcGCCCCAUGGcaGCggaugaggCGC-GCGAg -3'
miRNA:   3'- -CGCuUGGGGUACUagCGa-------GCGuCGCU- -5'
24634 3' -55.4 NC_005264.1 + 41684 0.66 0.940513
Target:  5'- uGCGGACCgUAcguauUGAUgcUGCUCGUAGCc- -3'
miRNA:   3'- -CGCUUGGgGU-----ACUA--GCGAGCGUCGcu -5'
24634 3' -55.4 NC_005264.1 + 100386 0.66 0.940047
Target:  5'- uGCGGaugccgcugcugcGCCCCGuauUGGUCGUgguugUGCuGCGAa -3'
miRNA:   3'- -CGCU-------------UGGGGU---ACUAGCGa----GCGuCGCU- -5'
24634 3' -55.4 NC_005264.1 + 50234 0.66 0.935745
Target:  5'- gGCGGGCCCCgcucccaguuuGUGcaccUGC-CGCGGCGGc -3'
miRNA:   3'- -CGCUUGGGG-----------UACua--GCGaGCGUCGCU- -5'
24634 3' -55.4 NC_005264.1 + 49856 0.66 0.935745
Target:  5'- -gGGGCCCUgGUGA-CGCcgCGCAGCGu -3'
miRNA:   3'- cgCUUGGGG-UACUaGCGa-GCGUCGCu -5'
24634 3' -55.4 NC_005264.1 + 144329 0.66 0.930741
Target:  5'- -aGGACCCCcaccaUGCUCGaCAGCGGc -3'
miRNA:   3'- cgCUUGGGGuacuaGCGAGC-GUCGCU- -5'
24634 3' -55.4 NC_005264.1 + 98048 0.66 0.927625
Target:  5'- cCGGugCCCAUGGgggCGCugcgcgcagaucguuUCGCGGCc- -3'
miRNA:   3'- cGCUugGGGUACUa--GCG---------------AGCGUCGcu -5'
24634 3' -55.4 NC_005264.1 + 69754 0.66 0.9255
Target:  5'- gGCGAGCUgagaagCCGaGGUCGC-CGCGGCc- -3'
miRNA:   3'- -CGCUUGG------GGUaCUAGCGaGCGUCGcu -5'
24634 3' -55.4 NC_005264.1 + 4247 0.66 0.920022
Target:  5'- uGCgGAGCCUCuUGc-CGCcgCGCAGCGAg -3'
miRNA:   3'- -CG-CUUGGGGuACuaGCGa-GCGUCGCU- -5'
24634 3' -55.4 NC_005264.1 + 156953 0.66 0.920022
Target:  5'- gGCGuacuACCUCAacuacUGGaccaCGCUCGCGGCGc -3'
miRNA:   3'- -CGCu---UGGGGU-----ACUa---GCGAGCGUCGCu -5'
24634 3' -55.4 NC_005264.1 + 47565 0.66 0.920022
Target:  5'- aCGAagGCCUCGUGccagauAUgGCUCGCGGgGAc -3'
miRNA:   3'- cGCU--UGGGGUAC------UAgCGAGCGUCgCU- -5'
24634 3' -55.4 NC_005264.1 + 116411 0.67 0.914308
Target:  5'- cGCuGAGCCCgCGgcaGGUCGCUgGgGGCGu -3'
miRNA:   3'- -CG-CUUGGG-GUa--CUAGCGAgCgUCGCu -5'
24634 3' -55.4 NC_005264.1 + 55336 0.67 0.914308
Target:  5'- --cGugCgCGUuGUCGCUCGCGGCGGc -3'
miRNA:   3'- cgcUugGgGUAcUAGCGAGCGUCGCU- -5'
24634 3' -55.4 NC_005264.1 + 104859 0.67 0.914308
Target:  5'- uGCGAACgCCA-GAUUGgaUGCGGCa- -3'
miRNA:   3'- -CGCUUGgGGUaCUAGCgaGCGUCGcu -5'
24634 3' -55.4 NC_005264.1 + 103187 0.67 0.914308
Target:  5'- aCGAACUCCAUGucagGCUCuuGCAGgGAg -3'
miRNA:   3'- cGCUUGGGGUACuag-CGAG--CGUCgCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.