miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24634 5' -53.9 NC_005264.1 + 30384 0.66 0.967696
Target:  5'- --gCGUCGCGUCUcggcggcggcgGUCGcGCGCCggUGCg -3'
miRNA:   3'- aagGCAGCGCAGG-----------UAGCaUGUGG--AUG- -5'
24634 5' -53.9 NC_005264.1 + 95857 0.66 0.967696
Target:  5'- -gCCGUUGCucGcCCAggCGUACACCaACg -3'
miRNA:   3'- aaGGCAGCG--CaGGUa-GCAUGUGGaUG- -5'
24634 5' -53.9 NC_005264.1 + 149411 0.66 0.967696
Target:  5'- --gCGUCGCGUCUcggcggcggcgGUCGcGCGCCggUGCg -3'
miRNA:   3'- aagGCAGCGCAGG-----------UAGCaUGUGG--AUG- -5'
24634 5' -53.9 NC_005264.1 + 18301 0.66 0.963447
Target:  5'- cUCCGUCGUcguugcgcgaggccGUCCGUC-UAUugCUAUc -3'
miRNA:   3'- aAGGCAGCG--------------CAGGUAGcAUGugGAUG- -5'
24634 5' -53.9 NC_005264.1 + 82211 0.67 0.946662
Target:  5'- -gCCG-CGCGUCCAUCGUccucggggcccaagaACGCUc-- -3'
miRNA:   3'- aaGGCaGCGCAGGUAGCA---------------UGUGGaug -5'
24634 5' -53.9 NC_005264.1 + 116613 0.67 0.92491
Target:  5'- cUCCgGUCGCaacacGUUCGUCGUugGCCa-- -3'
miRNA:   3'- aAGG-CAGCG-----CAGGUAGCAugUGGaug -5'
24634 5' -53.9 NC_005264.1 + 6256 0.68 0.919305
Target:  5'- cUCCGUCGCGgUCGUCGc-CGCCg-- -3'
miRNA:   3'- aAGGCAGCGCaGGUAGCauGUGGaug -5'
24634 5' -53.9 NC_005264.1 + 126720 0.68 0.919305
Target:  5'- gUCCGUcguguagcaagaCGCGUCCGUUc-GCACCUGu -3'
miRNA:   3'- aAGGCA------------GCGCAGGUAGcaUGUGGAUg -5'
24634 5' -53.9 NC_005264.1 + 125283 0.68 0.919305
Target:  5'- cUCCGUCGCGgUCGUCGc-CGCCg-- -3'
miRNA:   3'- aAGGCAGCGCaGGUAGCauGUGGaug -5'
24634 5' -53.9 NC_005264.1 + 42635 0.68 0.913454
Target:  5'- gUCCGcUGCGUacccCCAUCGcGCGCCgGCa -3'
miRNA:   3'- aAGGCaGCGCA----GGUAGCaUGUGGaUG- -5'
24634 5' -53.9 NC_005264.1 + 146121 0.68 0.907361
Target:  5'- gUUCGU-GCG-CCAUCGUGCAC-UACg -3'
miRNA:   3'- aAGGCAgCGCaGGUAGCAUGUGgAUG- -5'
24634 5' -53.9 NC_005264.1 + 161662 0.69 0.88764
Target:  5'- gUCCGcUGCGUaccCCAUCGcGCGCCgGCa -3'
miRNA:   3'- aAGGCaGCGCA---GGUAGCaUGUGGaUG- -5'
24634 5' -53.9 NC_005264.1 + 119180 0.69 0.880598
Target:  5'- -gCCGgcgcgcagCGCG-CCGacCGUACACCUACg -3'
miRNA:   3'- aaGGCa-------GCGCaGGUa-GCAUGUGGAUG- -5'
24634 5' -53.9 NC_005264.1 + 153 0.69 0.880598
Target:  5'- -gCCGgcgcgcagCGCG-CCGacCGUACACCUACg -3'
miRNA:   3'- aaGGCa-------GCGCaGGUa-GCAUGUGGAUG- -5'
24634 5' -53.9 NC_005264.1 + 5775 0.69 0.850215
Target:  5'- -aCCcaCGCGaCCGUCGUGCACCa-- -3'
miRNA:   3'- aaGGcaGCGCaGGUAGCAUGUGGaug -5'
24634 5' -53.9 NC_005264.1 + 124801 0.69 0.850215
Target:  5'- -aCCcaCGCGaCCGUCGUGCACCa-- -3'
miRNA:   3'- aaGGcaGCGCaGGUAGCAUGUGGaug -5'
24634 5' -53.9 NC_005264.1 + 79723 0.7 0.833779
Target:  5'- cUCCGcggccuUgGCGcCCGUCGgcgUACACCUGCg -3'
miRNA:   3'- aAGGC------AgCGCaGGUAGC---AUGUGGAUG- -5'
24634 5' -53.9 NC_005264.1 + 141986 0.7 0.825274
Target:  5'- cUCCuuuuaGUCGCGcagcgCCGUCGUAUGCCgcgGCa -3'
miRNA:   3'- aAGG-----CAGCGCa----GGUAGCAUGUGGa--UG- -5'
24634 5' -53.9 NC_005264.1 + 79766 0.7 0.816589
Target:  5'- gUUCCGUCGUGUC-AUCGUG-ACCgUACu -3'
miRNA:   3'- -AAGGCAGCGCAGgUAGCAUgUGG-AUG- -5'
24634 5' -53.9 NC_005264.1 + 136892 0.7 0.816589
Target:  5'- gUCCG-CGcCGUCCucaucuUCGUACGCCUc- -3'
miRNA:   3'- aAGGCaGC-GCAGGu-----AGCAUGUGGAug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.