miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24635 5' -43.2 NC_005264.1 + 50939 0.67 1
Target:  5'- --------cUGGucGAGGAAUCGCGCg -3'
miRNA:   3'- aaaagaaguACCuaUUCCUUAGUGCG- -5'
24635 5' -43.2 NC_005264.1 + 142448 0.67 1
Target:  5'- ---cUUUCGUGGuugcggGGGGAAUUACuGCg -3'
miRNA:   3'- aaaaGAAGUACCua----UUCCUUAGUG-CG- -5'
24635 5' -43.2 NC_005264.1 + 20808 0.66 1
Target:  5'- --gUCgagCAUGGAUAAaugcagacuucuGGAAUCugcCGCg -3'
miRNA:   3'- aaaAGaa-GUACCUAUU------------CCUUAGu--GCG- -5'
24635 5' -43.2 NC_005264.1 + 111217 0.69 0.999979
Target:  5'- --cUCcgUCGUGGAguucAAGGAguuaGUCACGUc -3'
miRNA:   3'- aaaAGa-AGUACCUa---UUCCU----UAGUGCG- -5'
24635 5' -43.2 NC_005264.1 + 41723 0.7 0.99996
Target:  5'- ---gCUUgCAUGGAUAcaugcucguuGGGGuUCACGCu -3'
miRNA:   3'- aaaaGAA-GUACCUAU----------UCCUuAGUGCG- -5'
24635 5' -43.2 NC_005264.1 + 160749 0.7 0.99996
Target:  5'- ---gCUUgCAUGGAUAcaugcucguuGGGGuUCACGCu -3'
miRNA:   3'- aaaaGAA-GUACCUAU----------UCCUuAGUGCG- -5'
24635 5' -43.2 NC_005264.1 + 100504 0.71 0.999717
Target:  5'- ---cCUUCAgcuUGGAUGAGGA--CAUGCc -3'
miRNA:   3'- aaaaGAAGU---ACCUAUUCCUuaGUGCG- -5'
24635 5' -43.2 NC_005264.1 + 93210 0.72 0.999419
Target:  5'- --gUCgUCAUGGAcgauGGGcAGUCGCGCc -3'
miRNA:   3'- aaaAGaAGUACCUau--UCC-UUAGUGCG- -5'
24635 5' -43.2 NC_005264.1 + 98608 0.75 0.994226
Target:  5'- -gUUCUUgGUGGAaAAcGGAAUCACGa -3'
miRNA:   3'- aaAAGAAgUACCUaUU-CCUUAGUGCg -5'
24635 5' -43.2 NC_005264.1 + 53760 0.75 0.992151
Target:  5'- -----aUC-UGGAgGAGGAGUCACGCu -3'
miRNA:   3'- aaaagaAGuACCUaUUCCUUAGUGCG- -5'
24635 5' -43.2 NC_005264.1 + 85735 1.13 0.032953
Target:  5'- cUUUUCUUCAUGGAUAAGGAAUCACGCg -3'
miRNA:   3'- -AAAAGAAGUACCUAUUCCUUAGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.