Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24636 | 3' | -56.8 | NC_005264.1 | + | 78685 | 0.66 | 0.917043 |
Target: 5'- cCGGCGCGCGCGcUGCgacCACuucccGGGGCu -3' miRNA: 3'- -GCUGUGCGCGCaGUGa--GUGca---CCCUG- -5' |
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24636 | 3' | -56.8 | NC_005264.1 | + | 48687 | 0.66 | 0.917043 |
Target: 5'- gGGCGCGagucugcucguCGCgGUCGCUCGCG-GGaGAUg -3' miRNA: 3'- gCUGUGC-----------GCG-CAGUGAGUGCaCC-CUG- -5' |
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24636 | 3' | -56.8 | NC_005264.1 | + | 148417 | 0.66 | 0.917043 |
Target: 5'- gGGCAgGcCGCcaUACggGCGUGGGACg -3' miRNA: 3'- gCUGUgC-GCGcaGUGagUGCACCCUG- -5' |
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24636 | 3' | -56.8 | NC_005264.1 | + | 42070 | 0.66 | 0.917043 |
Target: 5'- gCGGCGCGUgGCGUCAgcUGCGccGGGAUa -3' miRNA: 3'- -GCUGUGCG-CGCAGUgaGUGCa-CCCUG- -5' |
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24636 | 3' | -56.8 | NC_005264.1 | + | 143885 | 0.66 | 0.911292 |
Target: 5'- uCGGCGCG-GCGggCGCaacgUCGauUGUGGGACg -3' miRNA: 3'- -GCUGUGCgCGCa-GUG----AGU--GCACCCUG- -5' |
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24636 | 3' | -56.8 | NC_005264.1 | + | 49495 | 0.66 | 0.905313 |
Target: 5'- gGGCAgcaggUGCGCGUC-UUCACGUGccugcugcagaGGGCg -3' miRNA: 3'- gCUGU-----GCGCGCAGuGAGUGCAC-----------CCUG- -5' |
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24636 | 3' | -56.8 | NC_005264.1 | + | 26195 | 0.66 | 0.899108 |
Target: 5'- --cCACGCGCGUCgagGCUC-CGccGGGAa -3' miRNA: 3'- gcuGUGCGCGCAG---UGAGuGCa-CCCUg -5' |
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24636 | 3' | -56.8 | NC_005264.1 | + | 154254 | 0.66 | 0.892681 |
Target: 5'- -aACACGCGCGUCuGCggucaUACG-GGGAg -3' miRNA: 3'- gcUGUGCGCGCAG-UGa----GUGCaCCCUg -5' |
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24636 | 3' | -56.8 | NC_005264.1 | + | 86772 | 0.66 | 0.886034 |
Target: 5'- uCGACGCucGCgGCGUCGCg-GCGUcucugcaacgGGGACa -3' miRNA: 3'- -GCUGUG--CG-CGCAGUGagUGCA----------CCCUG- -5' |
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24636 | 3' | -56.8 | NC_005264.1 | + | 44947 | 0.67 | 0.879171 |
Target: 5'- cCGuuGCGCGCGUgACUCccuuCGUGGuagagcGGCg -3' miRNA: 3'- -GCugUGCGCGCAgUGAGu---GCACC------CUG- -5' |
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24636 | 3' | -56.8 | NC_005264.1 | + | 56923 | 0.67 | 0.872096 |
Target: 5'- gCGGCguACGUGCGUgGCgCACGgGGcGACg -3' miRNA: 3'- -GCUG--UGCGCGCAgUGaGUGCaCC-CUG- -5' |
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24636 | 3' | -56.8 | NC_005264.1 | + | 50814 | 0.67 | 0.872096 |
Target: 5'- uCGGCGCGCGCG-CAggUUUGCGUGuaGACg -3' miRNA: 3'- -GCUGUGCGCGCaGU--GAGUGCACc-CUG- -5' |
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24636 | 3' | -56.8 | NC_005264.1 | + | 6145 | 0.67 | 0.864814 |
Target: 5'- gGGcCGCGCGCccGUCGCgcaUCGCGUgcacgauguGGGGCa -3' miRNA: 3'- gCU-GUGCGCG--CAGUG---AGUGCA---------CCCUG- -5' |
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24636 | 3' | -56.8 | NC_005264.1 | + | 125172 | 0.67 | 0.864814 |
Target: 5'- gGGcCGCGCGCccGUCGCgcaUCGCGUgcacgauguGGGGCa -3' miRNA: 3'- gCU-GUGCGCG--CAGUG---AGUGCA---------CCCUG- -5' |
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24636 | 3' | -56.8 | NC_005264.1 | + | 141887 | 0.67 | 0.857331 |
Target: 5'- -aACACGCGaucaCGuUCACguggCACGUGGGGu -3' miRNA: 3'- gcUGUGCGC----GC-AGUGa---GUGCACCCUg -5' |
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24636 | 3' | -56.8 | NC_005264.1 | + | 54712 | 0.67 | 0.857331 |
Target: 5'- gGACAgggugggaaGCGUGgCGCUCACGUG-GACg -3' miRNA: 3'- gCUGUg--------CGCGCaGUGAGUGCACcCUG- -5' |
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24636 | 3' | -56.8 | NC_005264.1 | + | 39471 | 0.68 | 0.833729 |
Target: 5'- gCGACGCGCGC-UCAgcCGCcaGGGGCa -3' miRNA: 3'- -GCUGUGCGCGcAGUgaGUGcaCCCUG- -5' |
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24636 | 3' | -56.8 | NC_005264.1 | + | 47863 | 0.68 | 0.833729 |
Target: 5'- cCGGCACGCGCcUCAagUUCGCGcuaggcugcGGGAUa -3' miRNA: 3'- -GCUGUGCGCGcAGU--GAGUGCa--------CCCUG- -5' |
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24636 | 3' | -56.8 | NC_005264.1 | + | 95366 | 0.68 | 0.833729 |
Target: 5'- gCGGCGCGUGcCGcCAaacugcCagGCGUGGGACu -3' miRNA: 3'- -GCUGUGCGC-GCaGU------GagUGCACCCUG- -5' |
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24636 | 3' | -56.8 | NC_005264.1 | + | 158498 | 0.68 | 0.833729 |
Target: 5'- gCGACGCGCGC-UCAgcCGCcaGGGGCa -3' miRNA: 3'- -GCUGUGCGCGcAGUgaGUGcaCCCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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