miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24636 3' -56.8 NC_005264.1 + 102320 0.68 0.817101
Target:  5'- cCGGCAUGCGUagGUUACUCACGUuGuACg -3'
miRNA:   3'- -GCUGUGCGCG--CAGUGAGUGCAcCcUG- -5'
24636 3' -56.8 NC_005264.1 + 16696 0.69 0.790966
Target:  5'- uCGACACGaagacgugguCGCgGUC-CUCGCuUGGGACu -3'
miRNA:   3'- -GCUGUGC----------GCG-CAGuGAGUGcACCCUG- -5'
24636 3' -56.8 NC_005264.1 + 103444 0.69 0.763593
Target:  5'- aCGACugGgacaGCGUCAaggccccucaUUACGUGGGAa -3'
miRNA:   3'- -GCUGugCg---CGCAGUg---------AGUGCACCCUg -5'
24636 3' -56.8 NC_005264.1 + 98479 0.7 0.726532
Target:  5'- cCGGCACGCGCGagggcaucuccucagCGCUacaGUGGGAa -3'
miRNA:   3'- -GCUGUGCGCGCa--------------GUGAgugCACCCUg -5'
24636 3' -56.8 NC_005264.1 + 77024 0.71 0.676348
Target:  5'- uGACGCGCGUGUCGCUaACGcuaGGAa -3'
miRNA:   3'- gCUGUGCGCGCAGUGAgUGCac-CCUg -5'
24636 3' -56.8 NC_005264.1 + 99161 0.72 0.616218
Target:  5'- aCGACAuCGCGggggaCGUCACUCgcggcguagACGUGGGGu -3'
miRNA:   3'- -GCUGU-GCGC-----GCAGUGAG---------UGCACCCUg -5'
24636 3' -56.8 NC_005264.1 + 83140 0.72 0.616218
Target:  5'- aGGCGCGUcugcccucaugGUGUCugUCGCG-GGGAUg -3'
miRNA:   3'- gCUGUGCG-----------CGCAGugAGUGCaCCCUG- -5'
24636 3' -56.8 NC_005264.1 + 143075 0.72 0.606193
Target:  5'- -aGCAUGCGUGUCACaaUCGCGgcgcgaugcugGGGGCa -3'
miRNA:   3'- gcUGUGCGCGCAGUG--AGUGCa----------CCCUG- -5'
24636 3' -56.8 NC_005264.1 + 135569 0.75 0.438095
Target:  5'- aGAagcCGCGCGUCGCUCGCGacuacgggugggucGGGACg -3'
miRNA:   3'- gCUgu-GCGCGCAGUGAGUGCa-------------CCCUG- -5'
24636 3' -56.8 NC_005264.1 + 94413 0.79 0.256324
Target:  5'- gCGGCGCggacuGCGCGaUCGCUgACGUGGGAUg -3'
miRNA:   3'- -GCUGUG-----CGCGC-AGUGAgUGCACCCUG- -5'
24636 3' -56.8 NC_005264.1 + 154925 0.82 0.169899
Target:  5'- gGACGCGCGCGUUGCUagccagaGCGUGGGGg -3'
miRNA:   3'- gCUGUGCGCGCAGUGAg------UGCACCCUg -5'
24636 3' -56.8 NC_005264.1 + 85827 1.01 0.010263
Target:  5'- -cGCACGCGCGUCACUCACGUGGGACc -3'
miRNA:   3'- gcUGUGCGCGCAGUGAGUGCACCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.