Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24636 | 3' | -56.8 | NC_005264.1 | + | 6145 | 0.67 | 0.864814 |
Target: 5'- gGGcCGCGCGCccGUCGCgcaUCGCGUgcacgauguGGGGCa -3' miRNA: 3'- gCU-GUGCGCG--CAGUG---AGUGCA---------CCCUG- -5' |
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24636 | 3' | -56.8 | NC_005264.1 | + | 16696 | 0.69 | 0.790966 |
Target: 5'- uCGACACGaagacgugguCGCgGUC-CUCGCuUGGGACu -3' miRNA: 3'- -GCUGUGC----------GCG-CAGuGAGUGcACCCUG- -5' |
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24636 | 3' | -56.8 | NC_005264.1 | + | 26195 | 0.66 | 0.899108 |
Target: 5'- --cCACGCGCGUCgagGCUC-CGccGGGAa -3' miRNA: 3'- gcuGUGCGCGCAG---UGAGuGCa-CCCUg -5' |
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24636 | 3' | -56.8 | NC_005264.1 | + | 39471 | 0.68 | 0.833729 |
Target: 5'- gCGACGCGCGC-UCAgcCGCcaGGGGCa -3' miRNA: 3'- -GCUGUGCGCGcAGUgaGUGcaCCCUG- -5' |
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24636 | 3' | -56.8 | NC_005264.1 | + | 42070 | 0.66 | 0.917043 |
Target: 5'- gCGGCGCGUgGCGUCAgcUGCGccGGGAUa -3' miRNA: 3'- -GCUGUGCG-CGCAGUgaGUGCa-CCCUG- -5' |
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24636 | 3' | -56.8 | NC_005264.1 | + | 44947 | 0.67 | 0.879171 |
Target: 5'- cCGuuGCGCGCGUgACUCccuuCGUGGuagagcGGCg -3' miRNA: 3'- -GCugUGCGCGCAgUGAGu---GCACC------CUG- -5' |
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24636 | 3' | -56.8 | NC_005264.1 | + | 47863 | 0.68 | 0.833729 |
Target: 5'- cCGGCACGCGCcUCAagUUCGCGcuaggcugcGGGAUa -3' miRNA: 3'- -GCUGUGCGCGcAGU--GAGUGCa--------CCCUG- -5' |
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24636 | 3' | -56.8 | NC_005264.1 | + | 48687 | 0.66 | 0.917043 |
Target: 5'- gGGCGCGagucugcucguCGCgGUCGCUCGCG-GGaGAUg -3' miRNA: 3'- gCUGUGC-----------GCG-CAGUGAGUGCaCC-CUG- -5' |
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24636 | 3' | -56.8 | NC_005264.1 | + | 49495 | 0.66 | 0.905313 |
Target: 5'- gGGCAgcaggUGCGCGUC-UUCACGUGccugcugcagaGGGCg -3' miRNA: 3'- gCUGU-----GCGCGCAGuGAGUGCAC-----------CCUG- -5' |
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24636 | 3' | -56.8 | NC_005264.1 | + | 50814 | 0.67 | 0.872096 |
Target: 5'- uCGGCGCGCGCG-CAggUUUGCGUGuaGACg -3' miRNA: 3'- -GCUGUGCGCGCaGU--GAGUGCACc-CUG- -5' |
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24636 | 3' | -56.8 | NC_005264.1 | + | 54712 | 0.67 | 0.857331 |
Target: 5'- gGACAgggugggaaGCGUGgCGCUCACGUG-GACg -3' miRNA: 3'- gCUGUg--------CGCGCaGUGAGUGCACcCUG- -5' |
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24636 | 3' | -56.8 | NC_005264.1 | + | 56923 | 0.67 | 0.872096 |
Target: 5'- gCGGCguACGUGCGUgGCgCACGgGGcGACg -3' miRNA: 3'- -GCUG--UGCGCGCAgUGaGUGCaCC-CUG- -5' |
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24636 | 3' | -56.8 | NC_005264.1 | + | 77024 | 0.71 | 0.676348 |
Target: 5'- uGACGCGCGUGUCGCUaACGcuaGGAa -3' miRNA: 3'- gCUGUGCGCGCAGUGAgUGCac-CCUg -5' |
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24636 | 3' | -56.8 | NC_005264.1 | + | 78685 | 0.66 | 0.917043 |
Target: 5'- cCGGCGCGCGCGcUGCgacCACuucccGGGGCu -3' miRNA: 3'- -GCUGUGCGCGCaGUGa--GUGca---CCCUG- -5' |
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24636 | 3' | -56.8 | NC_005264.1 | + | 83140 | 0.72 | 0.616218 |
Target: 5'- aGGCGCGUcugcccucaugGUGUCugUCGCG-GGGAUg -3' miRNA: 3'- gCUGUGCG-----------CGCAGugAGUGCaCCCUG- -5' |
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24636 | 3' | -56.8 | NC_005264.1 | + | 85827 | 1.01 | 0.010263 |
Target: 5'- -cGCACGCGCGUCACUCACGUGGGACc -3' miRNA: 3'- gcUGUGCGCGCAGUGAGUGCACCCUG- -5' |
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24636 | 3' | -56.8 | NC_005264.1 | + | 86772 | 0.66 | 0.886034 |
Target: 5'- uCGACGCucGCgGCGUCGCg-GCGUcucugcaacgGGGACa -3' miRNA: 3'- -GCUGUG--CG-CGCAGUGagUGCA----------CCCUG- -5' |
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24636 | 3' | -56.8 | NC_005264.1 | + | 94413 | 0.79 | 0.256324 |
Target: 5'- gCGGCGCggacuGCGCGaUCGCUgACGUGGGAUg -3' miRNA: 3'- -GCUGUG-----CGCGC-AGUGAgUGCACCCUG- -5' |
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24636 | 3' | -56.8 | NC_005264.1 | + | 95366 | 0.68 | 0.833729 |
Target: 5'- gCGGCGCGUGcCGcCAaacugcCagGCGUGGGACu -3' miRNA: 3'- -GCUGUGCGC-GCaGU------GagUGCACCCUG- -5' |
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24636 | 3' | -56.8 | NC_005264.1 | + | 98479 | 0.7 | 0.726532 |
Target: 5'- cCGGCACGCGCGagggcaucuccucagCGCUacaGUGGGAa -3' miRNA: 3'- -GCUGUGCGCGCa--------------GUGAgugCACCCUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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