miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24636 3' -56.8 NC_005264.1 + 98479 0.7 0.726532
Target:  5'- cCGGCACGCGCGagggcaucuccucagCGCUacaGUGGGAa -3'
miRNA:   3'- -GCUGUGCGCGCa--------------GUGAgugCACCCUg -5'
24636 3' -56.8 NC_005264.1 + 94413 0.79 0.256324
Target:  5'- gCGGCGCggacuGCGCGaUCGCUgACGUGGGAUg -3'
miRNA:   3'- -GCUGUG-----CGCGC-AGUGAgUGCACCCUG- -5'
24636 3' -56.8 NC_005264.1 + 85827 1.01 0.010263
Target:  5'- -cGCACGCGCGUCACUCACGUGGGACc -3'
miRNA:   3'- gcUGUGCGCGCAGUGAGUGCACCCUG- -5'
24636 3' -56.8 NC_005264.1 + 49495 0.66 0.905313
Target:  5'- gGGCAgcaggUGCGCGUC-UUCACGUGccugcugcagaGGGCg -3'
miRNA:   3'- gCUGU-----GCGCGCAGuGAGUGCAC-----------CCUG- -5'
24636 3' -56.8 NC_005264.1 + 86772 0.66 0.886034
Target:  5'- uCGACGCucGCgGCGUCGCg-GCGUcucugcaacgGGGACa -3'
miRNA:   3'- -GCUGUG--CG-CGCAGUGagUGCA----------CCCUG- -5'
24636 3' -56.8 NC_005264.1 + 125172 0.67 0.864814
Target:  5'- gGGcCGCGCGCccGUCGCgcaUCGCGUgcacgauguGGGGCa -3'
miRNA:   3'- gCU-GUGCGCG--CAGUG---AGUGCA---------CCCUG- -5'
24636 3' -56.8 NC_005264.1 + 42070 0.66 0.917043
Target:  5'- gCGGCGCGUgGCGUCAgcUGCGccGGGAUa -3'
miRNA:   3'- -GCUGUGCG-CGCAGUgaGUGCa-CCCUG- -5'
24636 3' -56.8 NC_005264.1 + 148417 0.66 0.917043
Target:  5'- gGGCAgGcCGCcaUACggGCGUGGGACg -3'
miRNA:   3'- gCUGUgC-GCGcaGUGagUGCACCCUG- -5'
24636 3' -56.8 NC_005264.1 + 26195 0.66 0.899108
Target:  5'- --cCACGCGCGUCgagGCUC-CGccGGGAa -3'
miRNA:   3'- gcuGUGCGCGCAG---UGAGuGCa-CCCUg -5'
24636 3' -56.8 NC_005264.1 + 141887 0.67 0.857331
Target:  5'- -aACACGCGaucaCGuUCACguggCACGUGGGGu -3'
miRNA:   3'- gcUGUGCGC----GC-AGUGa---GUGCACCCUg -5'
24636 3' -56.8 NC_005264.1 + 95366 0.68 0.833729
Target:  5'- gCGGCGCGUGcCGcCAaacugcCagGCGUGGGACu -3'
miRNA:   3'- -GCUGUGCGC-GCaGU------GagUGCACCCUG- -5'
24636 3' -56.8 NC_005264.1 + 158498 0.68 0.833729
Target:  5'- gCGACGCGCGC-UCAgcCGCcaGGGGCa -3'
miRNA:   3'- -GCUGUGCGCGcAGUgaGUGcaCCCUG- -5'
24636 3' -56.8 NC_005264.1 + 143885 0.66 0.911292
Target:  5'- uCGGCGCG-GCGggCGCaacgUCGauUGUGGGACg -3'
miRNA:   3'- -GCUGUGCgCGCa-GUG----AGU--GCACCCUG- -5'
24636 3' -56.8 NC_005264.1 + 135569 0.75 0.438095
Target:  5'- aGAagcCGCGCGUCGCUCGCGacuacgggugggucGGGACg -3'
miRNA:   3'- gCUgu-GCGCGCAGUGAGUGCa-------------CCCUG- -5'
24636 3' -56.8 NC_005264.1 + 99161 0.72 0.616218
Target:  5'- aCGACAuCGCGggggaCGUCACUCgcggcguagACGUGGGGu -3'
miRNA:   3'- -GCUGU-GCGC-----GCAGUGAG---------UGCACCCUg -5'
24636 3' -56.8 NC_005264.1 + 77024 0.71 0.676348
Target:  5'- uGACGCGCGUGUCGCUaACGcuaGGAa -3'
miRNA:   3'- gCUGUGCGCGCAGUGAgUGCac-CCUg -5'
24636 3' -56.8 NC_005264.1 + 103444 0.69 0.763593
Target:  5'- aCGACugGgacaGCGUCAaggccccucaUUACGUGGGAa -3'
miRNA:   3'- -GCUGugCg---CGCAGUg---------AGUGCACCCUg -5'
24636 3' -56.8 NC_005264.1 + 16696 0.69 0.790966
Target:  5'- uCGACACGaagacgugguCGCgGUC-CUCGCuUGGGACu -3'
miRNA:   3'- -GCUGUGC----------GCG-CAGuGAGUGcACCCUG- -5'
24636 3' -56.8 NC_005264.1 + 154254 0.66 0.892681
Target:  5'- -aACACGCGCGUCuGCggucaUACG-GGGAg -3'
miRNA:   3'- gcUGUGCGCGCAG-UGa----GUGCaCCCUg -5'
24636 3' -56.8 NC_005264.1 + 6145 0.67 0.864814
Target:  5'- gGGcCGCGCGCccGUCGCgcaUCGCGUgcacgauguGGGGCa -3'
miRNA:   3'- gCU-GUGCGCG--CAGUG---AGUGCA---------CCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.