miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24637 3' -59.5 NC_005264.1 + 31175 0.66 0.793104
Target:  5'- cGGGGGCCGgaGgGCGAgcgagugggaCGGGGGgCUg -3'
miRNA:   3'- -UUCCUGGCgaUgCGCUa---------GCCCCCaGA- -5'
24637 3' -59.5 NC_005264.1 + 150202 0.66 0.793104
Target:  5'- cGGGGGCCGgaGgGCGAgcgagugggaCGGGGGgCUg -3'
miRNA:   3'- -UUCCUGGCgaUgCGCUa---------GCCCCCaGA- -5'
24637 3' -59.5 NC_005264.1 + 46930 0.66 0.793104
Target:  5'- cAAGGACUGCUACGgGGaCGGGuucccgacuccGUCUa -3'
miRNA:   3'- -UUCCUGGCGAUGCgCUaGCCCc----------CAGA- -5'
24637 3' -59.5 NC_005264.1 + 145859 0.66 0.784182
Target:  5'- -uGGACCgGCggaguuUGCGAaCGGGGGUg- -3'
miRNA:   3'- uuCCUGG-CGau----GCGCUaGCCCCCAga -5'
24637 3' -59.5 NC_005264.1 + 13600 0.66 0.784182
Target:  5'- cGGGACCgGCgauCGCGGUCGGGacgcGGg-- -3'
miRNA:   3'- uUCCUGG-CGau-GCGCUAGCCC----CCaga -5'
24637 3' -59.5 NC_005264.1 + 132627 0.66 0.784182
Target:  5'- cGGGACCgGCgauCGCGGUCGGGacgcGGg-- -3'
miRNA:   3'- uUCCUGG-CGau-GCGCUAGCCC----CCaga -5'
24637 3' -59.5 NC_005264.1 + 113511 0.66 0.77513
Target:  5'- -cGGGCCGa-GCGCGAacagccgCGGGaGGUCc -3'
miRNA:   3'- uuCCUGGCgaUGCGCUa------GCCC-CCAGa -5'
24637 3' -59.5 NC_005264.1 + 116443 0.66 0.77513
Target:  5'- --uGGCCGCggggGCGaCGAUCGGGgcGGUUg -3'
miRNA:   3'- uucCUGGCGa---UGC-GCUAGCCC--CCAGa -5'
24637 3' -59.5 NC_005264.1 + 130982 0.66 0.765957
Target:  5'- --cGACCGCgagGCGCuggaaGAUUucaGGGGGUCg -3'
miRNA:   3'- uucCUGGCGa--UGCG-----CUAG---CCCCCAGa -5'
24637 3' -59.5 NC_005264.1 + 132491 0.66 0.756669
Target:  5'- aAGGGGCUcCUGCGgGGacUCGGGGGa-- -3'
miRNA:   3'- -UUCCUGGcGAUGCgCU--AGCCCCCaga -5'
24637 3' -59.5 NC_005264.1 + 13464 0.66 0.756669
Target:  5'- aAGGGGCUcCUGCGgGGacUCGGGGGa-- -3'
miRNA:   3'- -UUCCUGGcGAUGCgCU--AGCCCCCaga -5'
24637 3' -59.5 NC_005264.1 + 80133 0.66 0.756669
Target:  5'- aAGGGGCCGCUGuCGUGGcu--GGGUCUa -3'
miRNA:   3'- -UUCCUGGCGAU-GCGCUagccCCCAGA- -5'
24637 3' -59.5 NC_005264.1 + 146890 0.68 0.649469
Target:  5'- -uGGACCGgUG-GCGGaggaGGGGGUCUa -3'
miRNA:   3'- uuCCUGGCgAUgCGCUag--CCCCCAGA- -5'
24637 3' -59.5 NC_005264.1 + 45761 0.68 0.639484
Target:  5'- uAGGACCcCUGCGCGGggcgcgcggagUGGGGaGUCg -3'
miRNA:   3'- uUCCUGGcGAUGCGCUa----------GCCCC-CAGa -5'
24637 3' -59.5 NC_005264.1 + 83223 0.69 0.609522
Target:  5'- -uGGGCCGUUGCGCG--UGGGcGUCUa -3'
miRNA:   3'- uuCCUGGCGAUGCGCuaGCCCcCAGA- -5'
24637 3' -59.5 NC_005264.1 + 62217 0.69 0.599557
Target:  5'- uGAGGGCgCGCUcCGCGGccgcuUCGGGGucGUCg -3'
miRNA:   3'- -UUCCUG-GCGAuGCGCU-----AGCCCC--CAGa -5'
24637 3' -59.5 NC_005264.1 + 159048 0.71 0.465112
Target:  5'- -cGGACCGCcACGCaGAUCGGcggcGGUCg -3'
miRNA:   3'- uuCCUGGCGaUGCG-CUAGCCc---CCAGa -5'
24637 3' -59.5 NC_005264.1 + 40021 0.71 0.465112
Target:  5'- -cGGACCGCcACGCaGAUCGGcggcGGUCg -3'
miRNA:   3'- uuCCUGGCGaUGCG-CUAGCCc---CCAGa -5'
24637 3' -59.5 NC_005264.1 + 123787 0.73 0.387377
Target:  5'- -uGGACCGCcGCGCGAacUCGGccaguccgacuGGGUCg -3'
miRNA:   3'- uuCCUGGCGaUGCGCU--AGCC-----------CCCAGa -5'
24637 3' -59.5 NC_005264.1 + 4761 0.73 0.387377
Target:  5'- -uGGACCGCcGCGCGAacUCGGccaguccgacuGGGUCg -3'
miRNA:   3'- uuCCUGGCGaUGCGCU--AGCC-----------CCCAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.