miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24637 5' -56.1 NC_005264.1 + 52953 0.66 0.928875
Target:  5'- cGAUGCagCGCCucuacGCGGCGGUgcugcgaacucAGGCGg -3'
miRNA:   3'- uCUAUG--GCGGcuu--CGCCGCCA-----------UCUGC- -5'
24637 5' -56.1 NC_005264.1 + 155275 0.66 0.928875
Target:  5'- cGGA-GCCGCaCGuGGCGGaagcgGGUAGGCc -3'
miRNA:   3'- -UCUaUGGCG-GCuUCGCCg----CCAUCUGc -5'
24637 5' -56.1 NC_005264.1 + 58745 0.66 0.928875
Target:  5'- cGcgGCCGCCgcugcgcuaucaGAGGCGcacgcGCGGUGGuCGg -3'
miRNA:   3'- uCuaUGGCGG------------CUUCGC-----CGCCAUCuGC- -5'
24637 5' -56.1 NC_005264.1 + 36248 0.66 0.928875
Target:  5'- cGGA-GCCGCaCGuGGCGGaagcgGGUAGGCc -3'
miRNA:   3'- -UCUaUGGCG-GCuUCGCCg----CCAUCUGc -5'
24637 5' -56.1 NC_005264.1 + 44857 0.66 0.928875
Target:  5'- cGGGUGCCGUCGAgagaucugcAGCcuggggaGGCGGgcccgucgucgucugGGGCGg -3'
miRNA:   3'- -UCUAUGGCGGCU---------UCG-------CCGCCa--------------UCUGC- -5'
24637 5' -56.1 NC_005264.1 + 120107 0.66 0.926787
Target:  5'- cGGGUGCCGCgcaGAAGUGGggcgcagcgagcaGGaGGACGg -3'
miRNA:   3'- -UCUAUGGCGg--CUUCGCCg------------CCaUCUGC- -5'
24637 5' -56.1 NC_005264.1 + 107183 0.66 0.923586
Target:  5'- aGGAUACCgggGCCGccaaaacuaaAGGCGGCGGcgcgcGCGg -3'
miRNA:   3'- -UCUAUGG---CGGC----------UUCGCCGCCauc--UGC- -5'
24637 5' -56.1 NC_005264.1 + 158243 0.66 0.923586
Target:  5'- ---cGCCGCCGcGGCgcuGGCGGggaGGGCc -3'
miRNA:   3'- ucuaUGGCGGCuUCG---CCGCCa--UCUGc -5'
24637 5' -56.1 NC_005264.1 + 57497 0.66 0.923586
Target:  5'- aAGAUGCUGgCGcgcGCGGCGGcgAGAg- -3'
miRNA:   3'- -UCUAUGGCgGCuu-CGCCGCCa-UCUgc -5'
24637 5' -56.1 NC_005264.1 + 121904 0.66 0.923586
Target:  5'- cGAUcgACCgggGCgCGgcGCGGCGGggaGGGCGa -3'
miRNA:   3'- uCUA--UGG---CG-GCuuCGCCGCCa--UCUGC- -5'
24637 5' -56.1 NC_005264.1 + 62596 0.66 0.923586
Target:  5'- ---gACCGCgCGAaguAGCGGCGc-GGACGu -3'
miRNA:   3'- ucuaUGGCG-GCU---UCGCCGCcaUCUGC- -5'
24637 5' -56.1 NC_005264.1 + 39216 0.66 0.923586
Target:  5'- ---cGCCGCCGcGGCgcuGGCGGggaGGGCc -3'
miRNA:   3'- ucuaUGGCGGCuUCG---CCGCCa--UCUGc -5'
24637 5' -56.1 NC_005264.1 + 15897 0.66 0.923586
Target:  5'- cAGAUcGCCGCCGAc-CGGCag-GGACGu -3'
miRNA:   3'- -UCUA-UGGCGGCUucGCCGccaUCUGC- -5'
24637 5' -56.1 NC_005264.1 + 2878 0.66 0.923586
Target:  5'- cGAUcgACCgggGCgCGgcGCGGCGGggaGGGCGa -3'
miRNA:   3'- uCUA--UGG---CG-GCuuCGCCGCCa--UCUGC- -5'
24637 5' -56.1 NC_005264.1 + 95325 0.66 0.921954
Target:  5'- gAGAUugccGCCGCCGGGcGCcgcgaaacggacucGGCGGggcGGCGg -3'
miRNA:   3'- -UCUA----UGGCGGCUU-CG--------------CCGCCau-CUGC- -5'
24637 5' -56.1 NC_005264.1 + 123860 0.66 0.918065
Target:  5'- cAGGUGuuCCGCC-AGGCGGCacagaGUAGGCu -3'
miRNA:   3'- -UCUAU--GGCGGcUUCGCCGc----CAUCUGc -5'
24637 5' -56.1 NC_005264.1 + 124298 0.66 0.918065
Target:  5'- cGAgucGCgGCCGGA-CGGCGGggcGGCGg -3'
miRNA:   3'- uCUa--UGgCGGCUUcGCCGCCau-CUGC- -5'
24637 5' -56.1 NC_005264.1 + 4834 0.66 0.918065
Target:  5'- cAGGUGuuCCGCC-AGGCGGCacagaGUAGGCu -3'
miRNA:   3'- -UCUAU--GGCGGcUUCGCCGc----CAUCUGc -5'
24637 5' -56.1 NC_005264.1 + 141189 0.66 0.918065
Target:  5'- cAGGUugUuGCCGGucauGgGaGCGGUAGACa -3'
miRNA:   3'- -UCUAugG-CGGCUu---CgC-CGCCAUCUGc -5'
24637 5' -56.1 NC_005264.1 + 84207 0.66 0.918065
Target:  5'- ---gGCCGCC---GCGGCGGUuaacagaagAGGCGc -3'
miRNA:   3'- ucuaUGGCGGcuuCGCCGCCA---------UCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.