miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24637 5' -56.1 NC_005264.1 + 2878 0.66 0.923586
Target:  5'- cGAUcgACCgggGCgCGgcGCGGCGGggaGGGCGa -3'
miRNA:   3'- uCUA--UGG---CG-GCuuCGCCGCCa--UCUGC- -5'
24637 5' -56.1 NC_005264.1 + 4834 0.66 0.918065
Target:  5'- cAGGUGuuCCGCC-AGGCGGCacagaGUAGGCu -3'
miRNA:   3'- -UCUAU--GGCGGcUUCGCCGc----CAUCUGc -5'
24637 5' -56.1 NC_005264.1 + 5271 0.66 0.918065
Target:  5'- cGAgucGCgGCCGGA-CGGCGGggcGGCGg -3'
miRNA:   3'- uCUa--UGgCGGCUUcGCCGCCau-CUGC- -5'
24637 5' -56.1 NC_005264.1 + 84207 0.66 0.918065
Target:  5'- ---gGCCGCC---GCGGCGGUuaacagaagAGGCGc -3'
miRNA:   3'- ucuaUGGCGGcuuCGCCGCCA---------UCUGC- -5'
24637 5' -56.1 NC_005264.1 + 141189 0.66 0.918065
Target:  5'- cAGGUugUuGCCGGucauGgGaGCGGUAGACa -3'
miRNA:   3'- -UCUAugG-CGGCUu---CgC-CGCCAUCUGc -5'
24637 5' -56.1 NC_005264.1 + 95325 0.66 0.921954
Target:  5'- gAGAUugccGCCGCCGGGcGCcgcgaaacggacucGGCGGggcGGCGg -3'
miRNA:   3'- -UCUA----UGGCGGCUU-CG--------------CCGCCau-CUGC- -5'
24637 5' -56.1 NC_005264.1 + 35793 0.67 0.873012
Target:  5'- cGGUGgCGCCGucGUGGCGGgcGcCu -3'
miRNA:   3'- uCUAUgGCGGCuuCGCCGCCauCuGc -5'
24637 5' -56.1 NC_005264.1 + 123633 0.67 0.873012
Target:  5'- ---cAgCGCCGcGGCGGC-GUAGGCGc -3'
miRNA:   3'- ucuaUgGCGGCuUCGCCGcCAUCUGC- -5'
24637 5' -56.1 NC_005264.1 + 120706 0.67 0.880114
Target:  5'- -----gCGCCGAcaaAGcCGGCGGUcGGGCGg -3'
miRNA:   3'- ucuaugGCGGCU---UC-GCCGCCA-UCUGC- -5'
24637 5' -56.1 NC_005264.1 + 75802 0.67 0.873012
Target:  5'- cAGGUcgucGCCGuCCGuAGGCGcGCGGUGGuCu -3'
miRNA:   3'- -UCUA----UGGC-GGC-UUCGC-CGCCAUCuGc -5'
24637 5' -56.1 NC_005264.1 + 97182 0.67 0.863465
Target:  5'- --uUGCCGCCGAGGCGGacaagcucuacgaGGACGa -3'
miRNA:   3'- ucuAUGGCGGCUUCGCCgcca---------UCUGC- -5'
24637 5' -56.1 NC_005264.1 + 99859 0.67 0.900109
Target:  5'- uGGAguCCGCCaAAGCcGCGGUGG-CGg -3'
miRNA:   3'- -UCUauGGCGGcUUCGcCGCCAUCuGC- -5'
24637 5' -56.1 NC_005264.1 + 159299 0.67 0.893666
Target:  5'- gAGAUGCuggaCGCCGccGCGucGCGGUucGACGa -3'
miRNA:   3'- -UCUAUG----GCGGCuuCGC--CGCCAu-CUGC- -5'
24637 5' -56.1 NC_005264.1 + 95441 0.67 0.893666
Target:  5'- cGGUugC-CCGGAgauGCGGCGcaucGUAGACGa -3'
miRNA:   3'- uCUAugGcGGCUU---CGCCGC----CAUCUGC- -5'
24637 5' -56.1 NC_005264.1 + 40272 0.67 0.893666
Target:  5'- gAGAUGCuggaCGCCGccGCGucGCGGUucGACGa -3'
miRNA:   3'- -UCUAUG----GCGGCuuCGC--CGCCAu-CUGC- -5'
24637 5' -56.1 NC_005264.1 + 71850 0.67 0.880114
Target:  5'- ---gACgCGUCGcGGCGGCGGUGuuccgcGACGg -3'
miRNA:   3'- ucuaUG-GCGGCuUCGCCGCCAU------CUGC- -5'
24637 5' -56.1 NC_005264.1 + 151846 0.67 0.865699
Target:  5'- uGggGCCGCCGcuccGGCGGCGacacGUGGGgGg -3'
miRNA:   3'- uCuaUGGCGGCu---UCGCCGC----CAUCUgC- -5'
24637 5' -56.1 NC_005264.1 + 76524 0.67 0.865699
Target:  5'- --cUACCGCCGcuuCGGCGGUAucuGGCa -3'
miRNA:   3'- ucuAUGGCGGCuucGCCGCCAU---CUGc -5'
24637 5' -56.1 NC_005264.1 + 97254 0.67 0.865699
Target:  5'- aAGAUgugGCCGCCG-GGCcuuGGCacGGUAGugGc -3'
miRNA:   3'- -UCUA---UGGCGGCuUCG---CCG--CCAUCugC- -5'
24637 5' -56.1 NC_005264.1 + 4606 0.67 0.873012
Target:  5'- ---cAgCGCCGcGGCGGC-GUAGGCGc -3'
miRNA:   3'- ucuaUgGCGGCuUCGCCGcCAUCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.