miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24637 5' -56.1 NC_005264.1 + 86317 1.09 0.00304
Target:  5'- cAGAUACCGCCGAAGCGGCGGUAGACGg -3'
miRNA:   3'- -UCUAUGGCGGCUUCGCCGCCAUCUGC- -5'
24637 5' -56.1 NC_005264.1 + 33875 0.82 0.194526
Target:  5'- uGGAgcguCCGCuCGAGGCGGCGGUGGAa- -3'
miRNA:   3'- -UCUau--GGCG-GCUUCGCCGCCAUCUgc -5'
24637 5' -56.1 NC_005264.1 + 152677 0.76 0.406447
Target:  5'- aAGAUACuCGCCGAGGCcuggacGCGGUGGAg- -3'
miRNA:   3'- -UCUAUG-GCGGCUUCGc-----CGCCAUCUgc -5'
24637 5' -56.1 NC_005264.1 + 3481 0.75 0.459482
Target:  5'- uGGGcuUGCCGCCGcacGCGGCGGgGGGCa -3'
miRNA:   3'- -UCU--AUGGCGGCuu-CGCCGCCaUCUGc -5'
24637 5' -56.1 NC_005264.1 + 122508 0.75 0.459482
Target:  5'- uGGGcuUGCCGCCGcacGCGGCGGgGGGCa -3'
miRNA:   3'- -UCU--AUGGCGGCuu-CGCCGCCaUCUGc -5'
24637 5' -56.1 NC_005264.1 + 108662 0.75 0.459482
Target:  5'- --uUACCGCCGAGGCgagguuGGCGGUGuGCGc -3'
miRNA:   3'- ucuAUGGCGGCUUCG------CCGCCAUcUGC- -5'
24637 5' -56.1 NC_005264.1 + 10996 0.75 0.468676
Target:  5'- ---cGCCGCCGGAGCGGCGGc----- -3'
miRNA:   3'- ucuaUGGCGGCUUCGCCGCCaucugc -5'
24637 5' -56.1 NC_005264.1 + 150560 0.75 0.487342
Target:  5'- gGGAggGCCGuuGggGUGGgGGcGGACGg -3'
miRNA:   3'- -UCUa-UGGCggCuuCGCCgCCaUCUGC- -5'
24637 5' -56.1 NC_005264.1 + 31533 0.75 0.487342
Target:  5'- gGGAggGCCGuuGggGUGGgGGcGGACGg -3'
miRNA:   3'- -UCUa-UGGCggCuuCGCCgCCaUCUGC- -5'
24637 5' -56.1 NC_005264.1 + 82178 0.74 0.496806
Target:  5'- -cGUGCgGCCGGucGGCGGCGGccaucguauUAGACGg -3'
miRNA:   3'- ucUAUGgCGGCU--UCGCCGCC---------AUCUGC- -5'
24637 5' -56.1 NC_005264.1 + 6819 0.74 0.506352
Target:  5'- aGGGUGuuGCCgGAGGCGGCGGc-GACu -3'
miRNA:   3'- -UCUAUggCGG-CUUCGCCGCCauCUGc -5'
24637 5' -56.1 NC_005264.1 + 81885 0.74 0.506352
Target:  5'- cGAUGgCGCCuuGGCGGCGaUGGGCGg -3'
miRNA:   3'- uCUAUgGCGGcuUCGCCGCcAUCUGC- -5'
24637 5' -56.1 NC_005264.1 + 125845 0.74 0.506352
Target:  5'- aGGGUGuuGCCgGAGGCGGCGGc-GACu -3'
miRNA:   3'- -UCUAUggCGG-CUUCGCCGCCauCUGc -5'
24637 5' -56.1 NC_005264.1 + 119996 0.73 0.565083
Target:  5'- aGGAaGCCcCUGggGCGGCaGGUGGGCc -3'
miRNA:   3'- -UCUaUGGcGGCuuCGCCG-CCAUCUGc -5'
24637 5' -56.1 NC_005264.1 + 71618 0.73 0.565083
Target:  5'- ---cACCGgCGAGGCGGCGGcagAGAUa -3'
miRNA:   3'- ucuaUGGCgGCUUCGCCGCCa--UCUGc -5'
24637 5' -56.1 NC_005264.1 + 970 0.73 0.565083
Target:  5'- aGGAaGCCcCUGggGCGGCaGGUGGGCc -3'
miRNA:   3'- -UCUaUGGcGGCuuCGCCG-CCAUCUGc -5'
24637 5' -56.1 NC_005264.1 + 134999 0.72 0.625437
Target:  5'- cGGAUGCCGCCGcgacAGUGGCGcGaucUAGGCc -3'
miRNA:   3'- -UCUAUGGCGGCu---UCGCCGC-C---AUCUGc -5'
24637 5' -56.1 NC_005264.1 + 110127 0.72 0.635555
Target:  5'- gAGA-GCCGCCGcgcuuuuGGgGGCGGgcGGCGa -3'
miRNA:   3'- -UCUaUGGCGGCu------UCgCCGCCauCUGC- -5'
24637 5' -56.1 NC_005264.1 + 141484 0.72 0.655776
Target:  5'- ---cACCgGCCGAGGCGGCccgGGACGa -3'
miRNA:   3'- ucuaUGG-CGGCUUCGCCGccaUCUGC- -5'
24637 5' -56.1 NC_005264.1 + 25597 0.71 0.665863
Target:  5'- ---gGCCGCCGGacgagAGCGGCG--AGACGa -3'
miRNA:   3'- ucuaUGGCGGCU-----UCGCCGCcaUCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.