miRNA display CGI


Results 21 - 40 of 98 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24637 5' -56.1 NC_005264.1 + 16567 0.71 0.675923
Target:  5'- uGGGcGgCGCCGggGCGGCGGcgcacauGACu -3'
miRNA:   3'- -UCUaUgGCGGCuuCGCCGCCau-----CUGc -5'
24637 5' -56.1 NC_005264.1 + 103132 0.71 0.685948
Target:  5'- cGGUaGCCGCCGgcGCGGCGcgcGGCGc -3'
miRNA:   3'- uCUA-UGGCGGCuuCGCCGCcauCUGC- -5'
24637 5' -56.1 NC_005264.1 + 64877 0.7 0.715727
Target:  5'- gAGAUugC-CCGcaAGGCGGCGG-AGAUGa -3'
miRNA:   3'- -UCUAugGcGGC--UUCGCCGCCaUCUGC- -5'
24637 5' -56.1 NC_005264.1 + 45640 0.7 0.725526
Target:  5'- aAGAUaACUGaCGAcGCGGCGGcUAGGCGc -3'
miRNA:   3'- -UCUA-UGGCgGCUuCGCCGCC-AUCUGC- -5'
24637 5' -56.1 NC_005264.1 + 122818 0.7 0.744878
Target:  5'- ---cGCCGCCGAucugcGUGGCGGUccGCGa -3'
miRNA:   3'- ucuaUGGCGGCUu----CGCCGCCAucUGC- -5'
24637 5' -56.1 NC_005264.1 + 3792 0.7 0.744878
Target:  5'- ---cGCCGCCGAucugcGUGGCGGUccGCGa -3'
miRNA:   3'- ucuaUGGCGGCUu----CGCCGCCAucUGC- -5'
24637 5' -56.1 NC_005264.1 + 139106 0.69 0.773161
Target:  5'- cGGcUGCUGCUG-AGCGGCGGcgugugcccuuUGGGCGu -3'
miRNA:   3'- -UCuAUGGCGGCuUCGCCGCC-----------AUCUGC- -5'
24637 5' -56.1 NC_005264.1 + 4273 0.69 0.773161
Target:  5'- cGGGaACCG-CGggGCGGCGGcAGAg- -3'
miRNA:   3'- -UCUaUGGCgGCuuCGCCGCCaUCUgc -5'
24637 5' -56.1 NC_005264.1 + 34320 0.69 0.773161
Target:  5'- -uAUAgCGCCuucGAGGCGGCGGU-GAUGu -3'
miRNA:   3'- ucUAUgGCGG---CUUCGCCGCCAuCUGC- -5'
24637 5' -56.1 NC_005264.1 + 123300 0.69 0.773161
Target:  5'- cGGGaACCG-CGggGCGGCGGcAGAg- -3'
miRNA:   3'- -UCUaUGGCgGCuuCGCCGCCaUCUgc -5'
24637 5' -56.1 NC_005264.1 + 18041 0.69 0.800337
Target:  5'- -cGUGCCGaCgCGAAGCGGCGGcgccGCGa -3'
miRNA:   3'- ucUAUGGC-G-GCUUCGCCGCCauc-UGC- -5'
24637 5' -56.1 NC_005264.1 + 158511 0.69 0.800337
Target:  5'- ---aGCCGCCaGggGCaGGCcugcgcuguGGUGGACGc -3'
miRNA:   3'- ucuaUGGCGG-CuuCG-CCG---------CCAUCUGC- -5'
24637 5' -56.1 NC_005264.1 + 39484 0.69 0.800337
Target:  5'- ---aGCCGCCaGggGCaGGCcugcgcuguGGUGGACGc -3'
miRNA:   3'- ucuaUGGCGG-CuuCG-CCG---------CCAUCUGC- -5'
24637 5' -56.1 NC_005264.1 + 122702 0.68 0.817724
Target:  5'- gGGcgGCCGUCucGGCGGCG--AGACGa -3'
miRNA:   3'- -UCuaUGGCGGcuUCGCCGCcaUCUGC- -5'
24637 5' -56.1 NC_005264.1 + 23946 0.68 0.817724
Target:  5'- ---cGCCGCCGAuggguauguGgGGCGGUuGGugGg -3'
miRNA:   3'- ucuaUGGCGGCUu--------CgCCGCCA-UCugC- -5'
24637 5' -56.1 NC_005264.1 + 110381 0.68 0.817724
Target:  5'- -aAUACCGCCGA--CGGCGGgcgcaugcuGACGc -3'
miRNA:   3'- ucUAUGGCGGCUucGCCGCCau-------CUGC- -5'
24637 5' -56.1 NC_005264.1 + 3675 0.68 0.817724
Target:  5'- gGGcgGCCGUCucGGCGGCG--AGACGa -3'
miRNA:   3'- -UCuaUGGCGGcuUCGCCGCcaUCUGC- -5'
24637 5' -56.1 NC_005264.1 + 145896 0.68 0.823658
Target:  5'- gGGAUGCUGgCGAgcuggaacagcuccGGCGGCGGgucAGcGCGg -3'
miRNA:   3'- -UCUAUGGCgGCU--------------UCGCCGCCa--UC-UGC- -5'
24637 5' -56.1 NC_005264.1 + 3759 0.68 0.826175
Target:  5'- --uUGCCGCCGggGCGcuGCGGgcccuUGGuCGa -3'
miRNA:   3'- ucuAUGGCGGCuuCGC--CGCC-----AUCuGC- -5'
24637 5' -56.1 NC_005264.1 + 122785 0.68 0.826175
Target:  5'- --uUGCCGCCGggGCGcuGCGGgcccuUGGuCGa -3'
miRNA:   3'- ucuAUGGCGGCuuCGC--CGCC-----AUCuGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.