miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24637 5' -56.1 NC_005264.1 + 5271 0.66 0.918065
Target:  5'- cGAgucGCgGCCGGA-CGGCGGggcGGCGg -3'
miRNA:   3'- uCUa--UGgCGGCUUcGCCGCCau-CUGC- -5'
24637 5' -56.1 NC_005264.1 + 104977 0.66 0.91231
Target:  5'- cGGUGCCGCCGucucUGGCGcu-GACGa -3'
miRNA:   3'- uCUAUGGCGGCuuc-GCCGCcauCUGC- -5'
24637 5' -56.1 NC_005264.1 + 155246 0.66 0.91231
Target:  5'- gGGAUGaggaagcaucuCCGCagCGgcGCGG-GGUAGGCGg -3'
miRNA:   3'- -UCUAU-----------GGCG--GCuuCGCCgCCAUCUGC- -5'
24637 5' -56.1 NC_005264.1 + 102872 0.66 0.911722
Target:  5'- ---cACCGCCGcguggcuGAGCGGCGc-GGACa -3'
miRNA:   3'- ucuaUGGCGGC-------UUCGCCGCcaUCUGc -5'
24637 5' -56.1 NC_005264.1 + 133767 0.66 0.906324
Target:  5'- ---cACCGCCGAcgaagAGCGGCagauGACGa -3'
miRNA:   3'- ucuaUGGCGGCU-----UCGCCGccauCUGC- -5'
24637 5' -56.1 NC_005264.1 + 25606 0.66 0.905713
Target:  5'- ---cGCCggGCCGGcguugcggaacacGGCGGCGGUGGGg- -3'
miRNA:   3'- ucuaUGG--CGGCU-------------UCGCCGCCAUCUgc -5'
24637 5' -56.1 NC_005264.1 + 99859 0.67 0.900109
Target:  5'- uGGAguCCGCCaAAGCcGCGGUGG-CGg -3'
miRNA:   3'- -UCUauGGCGGcUUCGcCGCCAUCuGC- -5'
24637 5' -56.1 NC_005264.1 + 45777 0.67 0.900109
Target:  5'- cGAUgGgCGCCGGAGCGGCuauugcGGUcuGGGCc -3'
miRNA:   3'- uCUA-UgGCGGCUUCGCCG------CCA--UCUGc -5'
24637 5' -56.1 NC_005264.1 + 53978 0.67 0.900109
Target:  5'- --uUGgCGCCGGAaCGGCGGcgAGACu -3'
miRNA:   3'- ucuAUgGCGGCUUcGCCGCCa-UCUGc -5'
24637 5' -56.1 NC_005264.1 + 95441 0.67 0.893666
Target:  5'- cGGUugC-CCGGAgauGCGGCGcaucGUAGACGa -3'
miRNA:   3'- uCUAugGcGGCUU---CGCCGC----CAUCUGC- -5'
24637 5' -56.1 NC_005264.1 + 159299 0.67 0.893666
Target:  5'- gAGAUGCuggaCGCCGccGCGucGCGGUucGACGa -3'
miRNA:   3'- -UCUAUG----GCGGCuuCGC--CGCCAu-CUGC- -5'
24637 5' -56.1 NC_005264.1 + 53069 0.67 0.893666
Target:  5'- aAGGUgGCCGCgGAcccAGCGGgagugucuaagcUGGUGGACa -3'
miRNA:   3'- -UCUA-UGGCGgCU---UCGCC------------GCCAUCUGc -5'
24637 5' -56.1 NC_005264.1 + 40272 0.67 0.893666
Target:  5'- gAGAUGCuggaCGCCGccGCGucGCGGUucGACGa -3'
miRNA:   3'- -UCUAUG----GCGGCuuCGC--CGCCAu-CUGC- -5'
24637 5' -56.1 NC_005264.1 + 27648 0.67 0.887
Target:  5'- cAGG-AUCGCCGAuuuGGCGGCGcacGUAGAa- -3'
miRNA:   3'- -UCUaUGGCGGCU---UCGCCGC---CAUCUgc -5'
24637 5' -56.1 NC_005264.1 + 71850 0.67 0.880114
Target:  5'- ---gACgCGUCGcGGCGGCGGUGuuccgcGACGg -3'
miRNA:   3'- ucuaUG-GCGGCuUCGCCGCCAU------CUGC- -5'
24637 5' -56.1 NC_005264.1 + 120706 0.67 0.880114
Target:  5'- -----gCGCCGAcaaAGcCGGCGGUcGGGCGg -3'
miRNA:   3'- ucuaugGCGGCU---UC-GCCGCCA-UCUGC- -5'
24637 5' -56.1 NC_005264.1 + 110579 0.67 0.873012
Target:  5'- uAGAUGCCGUgGccG-GGUGaGUAGGCGg -3'
miRNA:   3'- -UCUAUGGCGgCuuCgCCGC-CAUCUGC- -5'
24637 5' -56.1 NC_005264.1 + 154819 0.67 0.873012
Target:  5'- cGGUGgCGCCGucGUGGCGGgcGcCu -3'
miRNA:   3'- uCUAUgGCGGCuuCGCCGCCauCuGc -5'
24637 5' -56.1 NC_005264.1 + 75802 0.67 0.873012
Target:  5'- cAGGUcgucGCCGuCCGuAGGCGcGCGGUGGuCu -3'
miRNA:   3'- -UCUA----UGGC-GGC-UUCGC-CGCCAUCuGc -5'
24637 5' -56.1 NC_005264.1 + 123633 0.67 0.873012
Target:  5'- ---cAgCGCCGcGGCGGC-GUAGGCGc -3'
miRNA:   3'- ucuaUgGCGGCuUCGCCGcCAUCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.