miRNA display CGI


Results 41 - 60 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24637 5' -56.1 NC_005264.1 + 4606 0.67 0.873012
Target:  5'- ---cAgCGCCGcGGCGGC-GUAGGCGc -3'
miRNA:   3'- ucuaUgGCGGCuUCGCCGcCAUCUGC- -5'
24637 5' -56.1 NC_005264.1 + 75802 0.67 0.873012
Target:  5'- cAGGUcgucGCCGuCCGuAGGCGcGCGGUGGuCu -3'
miRNA:   3'- -UCUA----UGGC-GGC-UUCGC-CGCCAUCuGc -5'
24637 5' -56.1 NC_005264.1 + 97254 0.67 0.865699
Target:  5'- aAGAUgugGCCGCCG-GGCcuuGGCacGGUAGugGc -3'
miRNA:   3'- -UCUA---UGGCGGCuUCG---CCG--CCAUCugC- -5'
24637 5' -56.1 NC_005264.1 + 76524 0.67 0.865699
Target:  5'- --cUACCGCCGcuuCGGCGGUAucuGGCa -3'
miRNA:   3'- ucuAUGGCGGCuucGCCGCCAU---CUGc -5'
24637 5' -56.1 NC_005264.1 + 151846 0.67 0.865699
Target:  5'- uGggGCCGCCGcuccGGCGGCGacacGUGGGgGg -3'
miRNA:   3'- uCuaUGGCGGCu---UCGCCGC----CAUCUgC- -5'
24637 5' -56.1 NC_005264.1 + 97182 0.67 0.863465
Target:  5'- --uUGCCGCCGAGGCGGacaagcucuacgaGGACGa -3'
miRNA:   3'- ucuAUGGCGGCUUCGCCgcca---------UCUGC- -5'
24637 5' -56.1 NC_005264.1 + 31032 0.68 0.857418
Target:  5'- cGGUGCCGCCu-AGCGGUcGUgcggcugcguugcGGACGg -3'
miRNA:   3'- uCUAUGGCGGcuUCGCCGcCA-------------UCUGC- -5'
24637 5' -56.1 NC_005264.1 + 150059 0.68 0.857418
Target:  5'- cGGUGCCGCCu-AGCGGUcGUgcggcugcguugcGGACGg -3'
miRNA:   3'- uCUAUGGCGGcuUCGCCGcCA-------------UCUGC- -5'
24637 5' -56.1 NC_005264.1 + 82974 0.68 0.852022
Target:  5'- cGAUGuCCGCCGAAGUcaaauggucugauggGGCGGguucuguuggagGGGCa -3'
miRNA:   3'- uCUAU-GGCGGCUUCG---------------CCGCCa-----------UCUGc -5'
24637 5' -56.1 NC_005264.1 + 3596 0.68 0.850463
Target:  5'- cAGGUGaguagGCCGuGGUGGaCGGUGGGCGc -3'
miRNA:   3'- -UCUAUgg---CGGCuUCGCC-GCCAUCUGC- -5'
24637 5' -56.1 NC_005264.1 + 100606 0.68 0.842551
Target:  5'- aGGAUACCGacgaccCCGAAGCGGCcGcGGAgCGc -3'
miRNA:   3'- -UCUAUGGC------GGCUUCGCCGcCaUCU-GC- -5'
24637 5' -56.1 NC_005264.1 + 56439 0.68 0.842551
Target:  5'- cGGUGCuUGCCGAcguaGGCGGCGuacAGACa -3'
miRNA:   3'- uCUAUG-GCGGCU----UCGCCGCca-UCUGc -5'
24637 5' -56.1 NC_005264.1 + 40023 0.68 0.842551
Target:  5'- ---gACCGCCacgcaGAucGGCGGCGGUcGACc -3'
miRNA:   3'- ucuaUGGCGG-----CU--UCGCCGCCAuCUGc -5'
24637 5' -56.1 NC_005264.1 + 159050 0.68 0.842551
Target:  5'- ---gACCGCCacgcaGAucGGCGGCGGUcGACc -3'
miRNA:   3'- ucuaUGGCGG-----CU--UCGCCGCCAuCUGc -5'
24637 5' -56.1 NC_005264.1 + 13435 0.68 0.84175
Target:  5'- ---cGCCGCCGAGacgcgacGCGGCGGcgccgaagGGGCu -3'
miRNA:   3'- ucuaUGGCGGCUU-------CGCCGCCa-------UCUGc -5'
24637 5' -56.1 NC_005264.1 + 132462 0.68 0.84175
Target:  5'- ---cGCCGCCGAGacgcgacGCGGCGGcgccgaagGGGCu -3'
miRNA:   3'- ucuaUGGCGGCUU-------CGCCGCCa-------UCUGc -5'
24637 5' -56.1 NC_005264.1 + 31174 0.68 0.839334
Target:  5'- -cGUGCCGCCaacggucuGGCGGCGGgcaccgcagaccgAGGCGu -3'
miRNA:   3'- ucUAUGGCGGcu------UCGCCGCCa------------UCUGC- -5'
24637 5' -56.1 NC_005264.1 + 89096 0.68 0.834453
Target:  5'- --uUugUGCCGAuuaggccGCGGCGGgaGGACGa -3'
miRNA:   3'- ucuAugGCGGCUu------CGCCGCCa-UCUGC- -5'
24637 5' -56.1 NC_005264.1 + 122785 0.68 0.826175
Target:  5'- --uUGCCGCCGggGCGcuGCGGgcccuUGGuCGa -3'
miRNA:   3'- ucuAUGGCGGCuuCGC--CGCC-----AUCuGC- -5'
24637 5' -56.1 NC_005264.1 + 3759 0.68 0.826175
Target:  5'- --uUGCCGCCGggGCGcuGCGGgcccuUGGuCGa -3'
miRNA:   3'- ucuAUGGCGGCuuCGC--CGCC-----AUCuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.